* Package: sci-biology/ucsc-genome-browser-223 * Repository: gentoo * Maintainer: weaver@gentoo.org sci-biology@gentoo.org * USE: elibc_glibc kernel_linux mysql test userland_GNU vhosts x86 >>> Unpacking source... >>> Unpacking jksrc.v223.zip to /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work >>> Source unpacked in /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work >>> Preparing source in /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent ... make -j14 -C src clean make: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src' cd lib && make clean make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib' rm -f aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o gifcomp.o gifdecomp.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o mgCircle.o mgHugeFont.o mgLargeFont.o mgMediumFont.o mgPolygon.o mgSmallFont.o mgTinyFont.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rbTree.o rangeTree.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vGfx.o vGif.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o i686/jkweb.a cd tests && make clean make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib/tests' rm -rf *.o bin output *.tmp mimeTester.tmp mimeTester.out make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib/tests' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib' cd hg && make clean make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg' cd lib && make clean make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib' rm -f acemblyClass.o affyAllExonProbe.o affyAtlas.o affy10KDetails.o affy120KDetails.o affyOffset.o affyPairs.o agp.o agpFrag.o agpGap.o alignSeqSizes.o altGraph.o altGraphX.o ancientRref.o atomDb.o axtInfo.o axtLib.o bactigPos.o bamFile.o baseMaskCommon.o bdgpExprLink.o bdgpGeneInfo.o bed.o bed5FloatScore.o bed5Pval.o bed6FloatScore.o bed12Source.o bed12wSeq.o bedCart.o bgiGeneInfo.o bgiGeneSnp.o bgiSnp.o bioImage.o blastTab.o blastzNet.o blatServers.o borf.o borkPseudoHom.o botDelay.o cart.o cartDb.o cdsEvidence.o cdsOrtho.o cdsPick.o cdsSpec.o ccdsInfo.o ccdsGeneMap.o celeraCoverage.o celeraDupPositive.o cgapSage/cgapSage.o cgapSage/cgapSageLib.o cgh.o chainCart.o chainDb.o chainLink.o chainNet.o chainNetDbLoad.o chicken13kInfo.o chromBins.o chr18deletions.o chromGraph.o chromGraphFactory.o chromInfo.o chromInserts.o chromKeeper.o clonePos.o codeBlast.o codeBlastScore.o cogs.o cogsxra.o columnInfo.o contigAcc.o coordConv.o cnpIafrate.o cnpIafrate2.o cnpLocke.o cnpRedon.o cnpSebat.o cnpSebat2.o cnpSharp2.o cnpSharpCutoff.o cnpSharpSample.o cnpSharp.o cpgIsland.o cpgIslandExt.o ctgPos.o ctgPos2.o customFactory.o customPp.o customTrack.o cutter.o cytoBand.o dbDb.o dbRIP.o dbSnpRs.o defaultDb.o delConrad2.o delHinds2.o dgv.o dless.o dnaMotifSql.o dnaProbe.o dv.o dvBed.o dvXref2.o easyGene.o ec.o ecCode.o ecAttribute.o ecAttributeCode.o encode/encodeErge.o encode/encodeErgeHssCellLines.o encode/encodeHapMapAlleleFreq.o encode/encodeIndels.o encode/encodePeak.o encode/encodeRegionInfo.o encode/encodeRegionInfoCustom.o encode/encodeRna.o encode/encodeStanfordPromoters.o encode/encodeStanfordPromotersAverage.o encode/pairedTagAlign.o encode/tagAlign.o ensFace.o ensInfo.o ensPhusionBlast.o ensXRefZfish.o est3.o estOrientInfo.o estPair.o exoFish.o expData.o expRecord.o exprBed.o fbTables.o featureBits.o findKGAlias.o findKGProtAlias.o fishClones.o flyBase2004Xref.o flyBaseSwissProt.o flyreg.o flyreg2.o gbExtFile.o gbWarn.o gbMiscDiff.o gbProtAnn.o gcPercent.o gbSeq.o genbank.o gencodeGeneClass.o gencodeIntron.o genMapDb.o geneBands.o geneCheck.o geneCheckDetails.o geneCheckWidget.o geneGraph.o genePred.o genePredReader.o geneSimilarities.o genoLay.o genomeRangeTreeFile.o genomicDups.o genomicSuperDups.o ggCluster.o ggDbIo.o ggDump.o ggGraph.o ggMrnaAli.o ggTypes.o glDbRep.o goa.o goaPart.o googleAnalytics.o growthCondition.o grp.o hapmapAllelesOrtho.o hapmapAllelesSummary.o hapmapPhaseIIISummary.o hapmapSnps.o hapmapSnpsCombined.o hCommon.o hCytoBand.o hdb.o hgColors.o hgConfig.o hgExp.o hgFind.o hgFindSpec.o hgFindSpecCustom.o hgGene.o hgMaf.o hgRelate.o hgSeq.o hgdpGeo.o hPrint.o hVarSubst.o hvGfx.o HInv.o hui.o humanParalog.o imageClone.o isochores.o ispyTables.o itemAttr.o itemConf.o jalview.o jaxOrtholog.o jaxQTL.o jaxQTL3.o jksql.o joiner.o jsHelper.o kg1ToKg2.o jgiGene.o kgAlias.o kgColor.o kgProtAlias.o kgXref.o knownInfo.o knownMore.o knownToSuper.o ld.o ld2.o lfs.o liftOver.o liftOverChain.o liftUp.o llaInfo.o lsSnpPdb.o lsSnpPdbChimera.o mafFrames.o mafGene.o mafSummary.o mammalPsg.o mapSts.o mcnBreakpoints.o metaChromGraph.o microarray.o minChromSize.o minGeneInfo.o mrnaMisMatch.o mouseOrtho.o mouseSyn.o mouseSynWhd.o mysqlTableStatus.o netAlign.o netCart.o nonCodingUi.o omimTitle.o ooUtils.o orthoAlleles.o pal.o pbStamp.o pcrResult.o pepPred.o plasEndPairs.o polyGenotype.o protFeat.o pscreen.o pseudoGeneLink.o pslReader.o pslWScore.o putaInfo.o qaSeq.o rangeTreeFile.o rankProp.o recombRate.o recombRateRat.o recombRateMouse.o refLink.o refSeqStatus.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o riken.o rhMapZfishInfo.o rikenBest.o rikenCluster.o rmskOut.o rnaFold.o rnaGene.o rnaGroup.o rnaHybridization.o rnaPLFold.o tRNAs.o gbRNAs.o snoRNAs.o lowelabPfamHit.o lowelabArkinOperonScore.o lowelabTIGROperonScore.o rnaSecStr.o tfbsConsFactors.o retroMrnaInfo.o roughAli.o transMapStuff.o transMapInfo.o transMapGene.o transMapSrc.o sage.o sageCounts.o sageExp.o sample.o sqlProg.o tfbsCons.o tfbsConsSites.o sanger22extra.o sangerGene.o sangerGeneToWBGeneID.o sargassoSeaXra.o scopDes.o scoredRef.o sgdAbundance.o sgdClone.o sgdDescription.o sgdOther.o simpleNucDiff.o simpleRepeat.o snp.o snp125.o snp125CodingCoordless.o snpExceptions.o snpFasta.o snpMap.o snpTmp.o snpUi.o snp125Exceptions.o snp125Ui.o softPromoter.o softberryHom.o spDb.o splignAlign.o stanMad.o stsAlias.o stsInfo.o stsInfo2.o stsInfoMouse.o stsInfoMouseNew.o stsInfoRat.o stsMap.o stsMapMouse.o stsMapMouseNew.o stsMapRat.o stsMarker.o switchDbTss.o synMap.o synteny100000.o syntenyBerk.o syntenySanger.o tableDescriptions.o tableStatus.o targetDb.o tfbsConsMap.o taxonDivision.o taxonGeneticCode.o taxonName.o taxonNode.o taxonXref.o tigrCmrGene.o tigrOperon.o tilingPath.o traceInfo.o trackDb.o trackDbCustom.o trackLayout.o trackTable.o trackVersion.o trashDir.o transRegCode.o transRegCodeCondition.o transRegCodeProbe.o txCluster.o txCommon.o txEdgeBed.o txEdgeOrtho.o txGraph.o txInfo.o txRnaAccs.o validateGisaid.o vegaInfo.o vegaInfoZfish.o visiGene.o vntr.o wabAli.o web.o ncRna.o wgRna.o wigAsciiToBinary.o wigDataStream.o wiggle.o wiggleCart.o wiggleUtils.o wikiLink.o wikiTrack.o zdobnovSynt.o oreganno.o oregannoUi.o gvUi.o gv.o omicia.o protVar.o pgSnp.o alignInfo.o cddInfo.o loweutils.o cddDesc.o arCOGs.o arcogdesc.o megablastInfo.o; rm -f ../../lib/i686/jkhgap.a; make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/cartReset' rm -f cartReset.o cartReset make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/cartReset' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/das' rm -f das.o das make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/das' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgBlat' rm -f hgBlat.o hgBlat rm -f hgSs_*.fa hgSs_*.pslx make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgBlat' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCgiData' make[2]: `clean' is up to date. make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCgiData' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgConvert' rm -f hgConvert.o hgConvert make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgConvert' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGateway' rm -f hgGateway.o hgGateway make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGateway' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGene' rm -f hgGene.o altSplice.o ctd.o dnaBindMotif.o domains.o gad.o flyBaseInfo.o go.o info.o links.o microarray.o method.o localization.o mrnaDescriptions.o otherOrgs.o pathways.o pseudoGene.o rnaStructure.o sequence.o swissProtComments.o synonym.o wikiTrack.o hgGene make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGene' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGenome' rm -f browseRegions.o clickOnImage.o configure.o correlate.o hgGenome.o mainPage.o sortGenes.o upload.o usage.o custom.o wiggle.o maf.o bedList.o chromGraph.o import.o hgGenome make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGenome' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgPcr' rm -f hgPcr.o hgPcr make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgPcr' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgSession' rm -f hgSession.o hgSession make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgSession' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTables' rm -f hgTables.o asObj.o bedList.o bigBed.o bigWig.o chromGraph.o compositeTrack.o custom.o filterFields.o gffOut.o identifiers.o intersect.o correlate.o correlatePlot.o joining.o maf.o mainPage.o microarrayTables.o rangeHistogram.o schema.o pal.o seqOut.o sumStats.o usage.o wiggle.o wikiTrack.o galaxy.o userRegions.o hgTables make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTables' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTracks' rm -f hgTracks.o altGraphXTrack.o bamTrack.o bedGraph.o bedTrack.o bigBedTrack.o bigWigTrack.o chainTrack.o cgapSageTrack.o chromGraphTrack.o config.o contigTrack.o coverageTrack.o cytoBandTrack.o cutterTrack.o expRatioTracks.o factorSource.o goldTrack.o loweLabTracks.o mafTrack.o netTrack.o pslTrack.o rmskTrack.o sampleTracks.o simpleTracks.o switchGear.o transMapTracks.o wabaTrack.o wigTrack.o cds.o wigMafTrack.o encode.o variation.o transcriptome.o rnaFoldTrack.o retroGene.o hapmapTrack.o rnaPLFoldTrack.o wiki.o wikiTrack.o imageV2.o hgTracks rm -f ct_hgwdev_*.bed hgtIdeo_*.gif hgt_*.gif make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTracks' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTrackUi' rm -f hgTrackUi.o cgapSageUi.o encodePeakUi.o hgTrackUi make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTrackUi' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgc' rm -f hgc.o bamClick.o bigBedClick.o cgapSageClick.o encodeClick.o expClick.o mafClick.o hgdpClick.o regMotif.o wiggleClick.o retroClick.o lowelab.o rnaFoldClick.o transMapClick.o txCdsInfo.o ccdsClick.o mgcClick.o dbRIP.o wikiTrack.o virusClick.o hgc make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgc' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/cartDump' rm -f cartDump.o cartDump make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/cartDump' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgNear' rm -f hgNear.o advFilter.o afiAli.o association.o colTemplate.o configure.o customColumn.o examples.o expRatio.o flyBase.o getSeq.o go.o intronSize.o knownGene.o order.o pfam.o search.o userSettings.o hgNear make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgNear' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbGateway' rm -f pbGateway.o pbGateway make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbGateway' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbTracks' rm -f pbTracks.o pbTracks make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbTracks' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbGlobal' rm -f pbGlobal.o pbGlobal make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbGlobal' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgLiftOver' rm -f hgLiftOver.o hgLiftOver make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgLiftOver' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/visiGene/hgVisiGene' rm -f hgVisiGene.o captionElement.o configPage.o printCaption.o probePage.o visiSearch.o hgVisiGene make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/visiGene/hgVisiGene' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/mkEncodeFrameset' echo "nothing to clean here" nothing to clean here make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/mkEncodeFrameset' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/hgEncodeDataVersions' rm -f hgEncodeDataVersions.o hgEncodeDataVersions make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/hgEncodeDataVersions' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/hgEncodeVocab' rm -f hgEncodeVocab.o hgEncodeVocab make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/hgEncodeVocab' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/phyloGif' rm -f phyloGif.o phyloGif rm -f test.gif testWeb.gif make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/phyloGif' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgCustom' rm -f hgCustom.o hgCustom make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgCustom' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgPal' rm -f hgPal.o hgPal make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgPal' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCgiData' make[2]: `clean' is up to date. make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCgiData' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/js' make[2]: Nothing to be done for `clean'. make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/js' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadBed' rm -f hgLoadBed.o hgLoadBed tests/bed.tab make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadBed' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadWiggle' rm -f test_data/chr1_0.wib test_data/chr1_0.wig test_data/chr1_1.wib \ test_data/chr1_1.wig test_data/chr1_2.wib test_data/chr1_2.wig \ test_data/chr1_begin.ascii test_data/chr1_end.ascii \ test_data/chr1_middle.ascii test_data/chrM.ascii test_data/chrM.wib \ test_data/chrM.wig test_data/wiggle.tab \ hgLoadWiggle.o hgDumpWiggle.o hgWiggle.o hgWiggle wigEncode.o wigEncode hgLoadWiggle make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadWiggle' make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadMaf' rm -f hgLoadMaf.o hgLoadMafSummary.o hgLoadMaf hgLoadMafSummary tests/bed.tab make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadMaf' touch non-empty-rm.o find . -name \*.o -print | xargs rm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg' cd jkOwnLib && make clean make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib' rm -f bandExt.o crudeali.o ffAliHelp.o ffSeedExtend.o fuzzyFind.o genoFind.o gfBlatLib.o gfClientLib.o gfInternal.o gfOut.o gfPcrLib.o gfWebLib.o ooc.o patSpace.o splix.o supStitch.o trans3.o xenbig.o xensmall.o ../lib/i686/jkOwnLib.a make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib' cd utils && make clean make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils' touch non-empty-rm.o find . -name \*.o -print | xargs rm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils' touch non-empty-rm.o find . -name \*.o -print | xargs rm rm -f tags TAGS make: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src' make -j14 -C src/lib make: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o aliType.o -c aliType.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o apacheLog.o -c apacheLog.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o asParse.o -c asParse.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axt.o -c axt.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtAffine.o -c axtAffine.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o base64.o -c base64.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o basicBed.o -c basicBed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bbiRead.o -c bbiRead.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bbiWrite.o -c bbiWrite.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bigBed.o -c bigBed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o binRange.o -c binRange.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bits.o -c bits.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o blastOut.o -c blastOut.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o blastParse.o -c blastParse.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o boxClump.o -c boxClump.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o boxLump.o -c boxLump.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bPlusTree.o -c bPlusTree.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bwgCreate.o -c bwgCreate.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bwgQuery.o -c bwgQuery.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o cda.o -c cda.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chain.o -c chain.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainBlock.o -c chainBlock.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainConnect.o -c chainConnect.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainToAxt.o -c chainToAxt.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainToPsl.o -c chainToPsl.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o cheapcgi.o -c cheapcgi.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o cirTree.o -c cirTree.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o codebias.o -c codebias.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o colHash.o -c colHash.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o common.o -c common.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o correlate.o -c correlate.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o crTree.o -c crTree.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dgRange.o -c dgRange.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o diGraph.o -c diGraph.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dlist.o -c dlist.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnaLoad.o -c dnaLoad.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnaMarkov.o -c dnaMarkov.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnaMotif.o -c dnaMotif.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnaseq.o -c dnaseq.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnautil.o -c dnautil.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dtdParse.o -c dtdParse.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dystring.o -c dystring.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o emblParse.o -c emblParse.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o errCatch.o -c errCatch.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o errabort.o -c errabort.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fa.o -c fa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ffAli.o -c ffAli.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ffScore.o -c ffScore.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o filePath.o -c filePath.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fixColor.o -c fixColor.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o flydna.o -c flydna.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fof.o -c fof.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fuzzyShow.o -c fuzzyShow.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type 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-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o genomeRangeTree.o -c genomeRangeTree.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfNet.o -c gfNet.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gff.o -c gff.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gff3.o -c gff3.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfxPoly.o -c gfxPoly.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gifLabel.o -c gifLabel.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE 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-I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o jointalign.o -c jointalign.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o jpegSize.o -c jpegSize.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o keys.o -c keys.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc 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mafScore.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o md5.o -c md5.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o memalloc.o -c memalloc.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o memgfx.o -c memgfx.c i686-pc-linux-gnu-gcc -O2 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-Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mgMediumFont.o -c mgMediumFont.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mgPolygon.o -c mgPolygon.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mgSmallFont.o -c mgSmallFont.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall 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-D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o numObscure.o -c numObscure.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o obscure.o -c obscure.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o oldGff.o -c oldGff.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o oligoTm.o -c oligoTm.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o options.o -c options.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o osunix.o -c osunix.c obscure.c: In function ‘incCounterFile’: obscure.c:34:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result i686-pc-linux-gnu-gcc 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-g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o sufx.o -c sufx.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o synQueue.o -c synQueue.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o tabRow.o -c tabRow.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o textOut.o -c textOut.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o tokenizer.o -c tokenizer.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o trix.o -c trix.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o twoBit.o -c twoBit.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o udc.o -c udc.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o vGfx.o -c vGfx.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o vGif.o -c vGif.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o vPng.o -c vPng.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o verbose.o -c verbose.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o wildcmp.o -c wildcmp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o wormdna.o -c wormdna.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xAli.o -c xAli.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xa.o -c xa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xap.o -c xap.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xenshow.o -c xenshow.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xmlEscape.o -c xmlEscape.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xp.o -c xp.c twoBit.c: In function ‘twoBitWriteOne’: twoBit.c:201:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result twoBit.c:203:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result twoBit.c:209:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result twoBit.c:211:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o zlibFace.o -c zlibFace.c ar rcus i686/jkweb.a aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o gifcomp.o gifdecomp.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o mgCircle.o mgHugeFont.o mgLargeFont.o mgMediumFont.o mgPolygon.o mgSmallFont.o mgTinyFont.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rbTree.o rangeTree.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vGfx.o vGif.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o make: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib' make -j14 -C src/jkOwnLib make: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bandExt.o -c bandExt.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o crudeali.o -c crudeali.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ffAliHelp.o -c ffAliHelp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ffSeedExtend.o -c ffSeedExtend.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fuzzyFind.o -c fuzzyFind.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o genoFind.o -c genoFind.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfBlatLib.o -c gfBlatLib.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfClientLib.o -c gfClientLib.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfInternal.o -c gfInternal.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfOut.o -c gfOut.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfPcrLib.o -c gfPcrLib.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfWebLib.o -c gfWebLib.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ooc.o -c ooc.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o patSpace.o -c patSpace.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o splix.o -c splix.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o supStitch.o -c supStitch.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o trans3.o -c trans3.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xenbig.o -c xenbig.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xensmall.o -c xensmall.c ar rcus ../lib/i686/jkOwnLib.a bandExt.o crudeali.o ffAliHelp.o ffSeedExtend.o fuzzyFind.o genoFind.o gfBlatLib.o gfClientLib.o gfInternal.o gfOut.o gfPcrLib.o gfWebLib.o ooc.o patSpace.o splix.o supStitch.o trans3.o xenbig.o xensmall.o make: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib' make -j14 -C src/utils/stringify make: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/stringify' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o stringify.o -c stringify.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify stringify.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify make: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/stringify' make -j14 -C src blatSuite make: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src' cd lib && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib' ar rcus i686/jkweb.a aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o gifcomp.o gifdecomp.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o mgCircle.o mgHugeFont.o mgLargeFont.o mgMediumFont.o mgPolygon.o mgSmallFont.o mgTinyFont.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rbTree.o rangeTree.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vGfx.o vGif.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib' cd jkOwnLib && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib' make[1]: `../lib/i686/jkOwnLib.a' is up to date. make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib' cd blat && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/blat' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o blat.o -c blat.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blat blat.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blat skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blat make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/blat' cd gfClient && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/gfClient' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfClient.o -c gfClient.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gfClient gfClient.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gfClient skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gfClient make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/gfClient' cd gfServer && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/gfServer' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfServer.o -c gfServer.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gfServer gfServer.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gfServer skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gfServer make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/gfServer' cd webBlat && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/webBlat' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o webBlat.o -c webBlat.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o webBlat webBlat.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a -lm echo 'skipping strip' webBlat skipping strip webBlat make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/webBlat' cd hg/pslPretty && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslPretty' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslPretty.o -c pslPretty.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslPretty pslPretty.o ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslPretty' cd hg/pslReps && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslReps' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslReps.o -c pslReps.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslReps pslReps.o ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslReps' cd hg/pslSort && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSort' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslSort.o -c pslSort.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSort pslSort.o ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSort' cd utils/nibFrag && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/nibFrag' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o nibFrag.o -c nibFrag.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibFrag nibFrag.o ../../lib/i686/jkweb.a echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibFrag skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibFrag make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/nibFrag' cd utils/faToNib && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToNib' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faToNib.o -c faToNib.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToNib faToNib.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToNib skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToNib make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToNib' cd utils/faToTwoBit && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToTwoBit' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faToTwoBit.o -c faToTwoBit.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToTwoBit faToTwoBit.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToTwoBit skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToTwoBit make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToTwoBit' cd utils/twoBitToFa && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/twoBitToFa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o twoBitToFa.o -c twoBitToFa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitToFa twoBitToFa.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitToFa skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitToFa make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/twoBitToFa' cd utils/twoBitInfo && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/twoBitInfo' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o twoBitInfo.o -c twoBitInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitInfo twoBitInfo.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitInfo skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitInfo make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/twoBitInfo' cd isPcr && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr' cd gfPcr && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr/gfPcr' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfPcr.o -c gfPcr.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gfPcr gfPcr.o ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr/gfPcr' cd isPcr && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr/isPcr' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o isPcr.o -c isPcr.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/isPcr isPcr.o ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/isPcr skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/isPcr make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr/isPcr' cd webPcr && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr/webPcr' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o webPcr.o -c webPcr.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o webPcr webPcr.o ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' webPcr skipping strip webPcr make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr/webPcr' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr' cd blatz && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/blatz' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o standalone.o -c standalone.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o align.o -c align.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bzp.o -c bzp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gapless.o -c gapless.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o index.o -c index.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o output.o -c output.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o client.o -c client.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o server.o -c server.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blatzClient client.o bzp.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blatzClient skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blatzClient i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blatz standalone.o align.o bzp.o gapless.o index.o output.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a -lm i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blatzServer server.o align.o bzp.o gapless.o index.o output.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blatzServer skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blatzServer echo made made make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/blatz' make: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src' make -j14 -j1 -C src/hg utils make: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg' cd lib && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o acemblyClass.o -c acemblyClass.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o affyAllExonProbe.o -c affyAllExonProbe.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o affyAtlas.o -c affyAtlas.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o affy10KDetails.o -c affy10KDetails.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o affy120KDetails.o -c affy120KDetails.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o affyOffset.o -c affyOffset.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o affyPairs.o -c affyPairs.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o agp.o -c agp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o agpFrag.o -c agpFrag.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o agpGap.o -c agpGap.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o alignSeqSizes.o -c alignSeqSizes.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o altGraph.o -c altGraph.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o altGraphX.o -c altGraphX.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ancientRref.o -c ancientRref.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o atomDb.o -c atomDb.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o axtInfo.o -c axtInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o axtLib.o -c axtLib.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bactigPos.o -c bactigPos.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bamFile.o -c bamFile.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o baseMaskCommon.o -c baseMaskCommon.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bdgpExprLink.o -c bdgpExprLink.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bdgpGeneInfo.o -c bdgpGeneInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bed.o -c bed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bed5FloatScore.o -c bed5FloatScore.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bed5Pval.o -c bed5Pval.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bed6FloatScore.o -c bed6FloatScore.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bed12Source.o -c bed12Source.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bed12wSeq.o -c bed12wSeq.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bedCart.o -c bedCart.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bgiGeneInfo.o -c bgiGeneInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bgiGeneSnp.o -c bgiGeneSnp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bgiSnp.o -c bgiSnp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bioImage.o -c bioImage.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o blastTab.o -c blastTab.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o blastzNet.o -c blastzNet.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o blatServers.o -c blatServers.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o borf.o -c borf.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o borkPseudoHom.o -c borkPseudoHom.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o botDelay.o -c botDelay.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cart.o -c cart.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cartDb.o -c cartDb.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cdsEvidence.o -c cdsEvidence.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cdsOrtho.o -c cdsOrtho.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cdsPick.o -c cdsPick.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cdsSpec.o -c cdsSpec.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ccdsInfo.o -c ccdsInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ccdsGeneMap.o -c ccdsGeneMap.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o celeraCoverage.o -c celeraCoverage.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o celeraDupPositive.o -c celeraDupPositive.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cgapSage/cgapSage.o -c cgapSage/cgapSage.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cgapSage/cgapSageLib.o -c cgapSage/cgapSageLib.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cgh.o -c cgh.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chainCart.o -c chainCart.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chainDb.o -c chainDb.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chainLink.o -c chainLink.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chainNet.o -c chainNet.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chainNetDbLoad.o -c chainNetDbLoad.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chicken13kInfo.o -c chicken13kInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chromBins.o -c chromBins.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chr18deletions.o -c chr18deletions.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chromGraph.o -c chromGraph.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chromGraphFactory.o -c chromGraphFactory.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chromInfo.o -c chromInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chromInserts.o -c chromInserts.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chromKeeper.o -c chromKeeper.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o clonePos.o -c clonePos.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o codeBlast.o -c codeBlast.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o codeBlastScore.o -c codeBlastScore.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cogs.o -c cogs.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cogsxra.o -c cogsxra.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o columnInfo.o -c columnInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o contigAcc.o -c contigAcc.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o coordConv.o -c coordConv.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpIafrate.o -c cnpIafrate.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpIafrate2.o -c cnpIafrate2.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpLocke.o -c cnpLocke.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpRedon.o -c cnpRedon.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpSebat.o -c cnpSebat.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpSebat2.o -c cnpSebat2.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpSharp2.o -c cnpSharp2.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpSharpCutoff.o -c cnpSharpCutoff.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpSharpSample.o -c cnpSharpSample.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpSharp.o -c cnpSharp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cpgIsland.o -c cpgIsland.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cpgIslandExt.o -c cpgIslandExt.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ctgPos.o -c ctgPos.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ctgPos2.o -c ctgPos2.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o customFactory.o -c customFactory.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o customPp.o -c customPp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o customTrack.o -c customTrack.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cutter.o -c cutter.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cytoBand.o -c cytoBand.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dbDb.o -c dbDb.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dbRIP.o -c dbRIP.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dbSnpRs.o -c dbSnpRs.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o defaultDb.o -c defaultDb.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o delConrad2.o -c delConrad2.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o delHinds2.o -c delHinds2.c i686-pc-linux-gnu-gcc -O2 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dnaMotifSql.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dnaProbe.o -c dnaProbe.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dv.o -c dv.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dvBed.o -c dvBed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dvXref2.o -c dvXref2.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o easyGene.o -c easyGene.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ec.o -c ec.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ecCode.o -c ecCode.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ecAttribute.o -c ecAttribute.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ecAttributeCode.o -c ecAttributeCode.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeErge.o -c encode/encodeErge.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeErgeHssCellLines.o -c encode/encodeErgeHssCellLines.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeHapMapAlleleFreq.o -c encode/encodeHapMapAlleleFreq.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeIndels.o -c encode/encodeIndels.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodePeak.o -c encode/encodePeak.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeRegionInfo.o -c encode/encodeRegionInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeRegionInfoCustom.o -c encode/encodeRegionInfoCustom.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeRna.o -c encode/encodeRna.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeStanfordPromoters.o -c encode/encodeStanfordPromoters.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeStanfordPromotersAverage.o -c encode/encodeStanfordPromotersAverage.c i686-pc-linux-gnu-gcc 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-I../../../../../inc -I/usr/include/mysql -o ensFace.o -c ensFace.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ensInfo.o -c ensInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ensPhusionBlast.o -c ensPhusionBlast.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ensXRefZfish.o -c ensXRefZfish.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o est3.o -c est3.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o estOrientInfo.o -c estOrientInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o estPair.o -c estPair.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o exoFish.o -c exoFish.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o expData.o -c expData.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o expRecord.o -c expRecord.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o exprBed.o -c exprBed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o fbTables.o -c fbTables.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o featureBits.o -c featureBits.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o findKGAlias.o -c findKGAlias.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o findKGProtAlias.o -c findKGProtAlias.c i686-pc-linux-gnu-gcc -O2 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-I/usr/include/mysql -o flyBaseSwissProt.o -c flyBaseSwissProt.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o flyreg.o -c flyreg.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o flyreg2.o -c flyreg2.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gbExtFile.o -c gbExtFile.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gbWarn.o -c gbWarn.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gbMiscDiff.o -c gbMiscDiff.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gbProtAnn.o -c gbProtAnn.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gcPercent.o -c gcPercent.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gbSeq.o -c gbSeq.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE 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-Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genMapDb.o -c genMapDb.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o geneBands.o -c geneBands.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o geneCheck.o -c geneCheck.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o geneCheckDetails.o -c geneCheckDetails.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o geneCheckWidget.o -c geneCheckWidget.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o geneGraph.o -c geneGraph.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genePred.o -c genePred.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genePredReader.o -c genePredReader.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o geneSimilarities.o -c geneSimilarities.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genoLay.o -c genoLay.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genomeRangeTreeFile.o -c genomeRangeTreeFile.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genomicDups.o -c genomicDups.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genomicSuperDups.o -c genomicSuperDups.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ggCluster.o -c ggCluster.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ggDbIo.o -c ggDbIo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ggDump.o -c ggDump.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ggGraph.o -c ggGraph.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ggMrnaAli.o -c ggMrnaAli.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ggTypes.o -c ggTypes.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o glDbRep.o -c glDbRep.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o goa.o -c goa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o goaPart.o -c goaPart.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o googleAnalytics.o -c googleAnalytics.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o growthCondition.o -c growthCondition.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o grp.o -c grp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hapmapAllelesOrtho.o -c hapmapAllelesOrtho.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hapmapAllelesSummary.o -c hapmapAllelesSummary.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hapmapPhaseIIISummary.o -c hapmapPhaseIIISummary.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hapmapSnps.o -c hapmapSnps.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hapmapSnpsCombined.o -c hapmapSnpsCombined.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hCommon.o -c hCommon.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hCytoBand.o -c hCytoBand.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hdb.o -c hdb.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgColors.o -c hgColors.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgConfig.o -c hgConfig.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgExp.o -c hgExp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgFind.o -c hgFind.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgFindSpec.o -c hgFindSpec.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgFindSpecCustom.o -c hgFindSpecCustom.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgGene.o -c hgGene.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgMaf.o -c hgMaf.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgRelate.o -c hgRelate.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgSeq.o -c hgSeq.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgdpGeo.o -c hgdpGeo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hPrint.o -c hPrint.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hVarSubst.o -c hVarSubst.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hvGfx.o -c hvGfx.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o HInv.o -c HInv.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hui.o -c hui.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o humanParalog.o -c humanParalog.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o imageClone.o -c imageClone.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o isochores.o -c isochores.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ispyTables.o -c ispyTables.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o itemAttr.o -c itemAttr.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o itemConf.o -c itemConf.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o jalview.o -c jalview.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o jaxOrtholog.o -c jaxOrtholog.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o jaxQTL.o -c jaxQTL.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o jaxQTL3.o -c jaxQTL3.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o jksql.o -c jksql.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o joiner.o -c joiner.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o jsHelper.o -c jsHelper.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o kg1ToKg2.o -c kg1ToKg2.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o jgiGene.o -c jgiGene.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o kgAlias.o -c kgAlias.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o kgColor.o -c kgColor.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o kgProtAlias.o -c kgProtAlias.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o kgXref.o -c kgXref.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o knownInfo.o -c knownInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o knownMore.o -c knownMore.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o knownToSuper.o -c knownToSuper.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ld.o -c ld.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ld2.o -c ld2.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o lfs.o -c lfs.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o liftOver.o -c liftOver.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o liftOverChain.o -c liftOverChain.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o liftUp.o -c liftUp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o llaInfo.o -c llaInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o lsSnpPdb.o -c lsSnpPdb.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o lsSnpPdbChimera.o -c lsSnpPdbChimera.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mafFrames.o -c mafFrames.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mafGene.o -c mafGene.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mafSummary.o -c mafSummary.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mammalPsg.o -c mammalPsg.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mapSts.o -c mapSts.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mcnBreakpoints.o -c mcnBreakpoints.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o metaChromGraph.o -c metaChromGraph.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o microarray.o -c microarray.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o minChromSize.o -c minChromSize.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o minGeneInfo.o -c minGeneInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mrnaMisMatch.o -c mrnaMisMatch.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mouseOrtho.o -c mouseOrtho.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mouseSyn.o -c mouseSyn.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mouseSynWhd.o -c mouseSynWhd.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mysqlTableStatus.o -c mysqlTableStatus.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o netAlign.o -c netAlign.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o netCart.o -c netCart.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o nonCodingUi.o -c nonCodingUi.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o omimTitle.o -c omimTitle.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ooUtils.o -c ooUtils.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o orthoAlleles.o -c orthoAlleles.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pal.o -c pal.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pbStamp.o -c pbStamp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pcrResult.o -c pcrResult.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pepPred.o -c pepPred.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o plasEndPairs.o -c plasEndPairs.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o polyGenotype.o -c polyGenotype.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o protFeat.o -c protFeat.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pscreen.o -c pscreen.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pseudoGeneLink.o -c pseudoGeneLink.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pslReader.o -c pslReader.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pslWScore.o -c pslWScore.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o putaInfo.o -c putaInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o qaSeq.o -c qaSeq.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rangeTreeFile.o -c rangeTreeFile.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rankProp.o -c rankProp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o recombRate.o -c recombRate.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o recombRateRat.o -c recombRateRat.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o recombRateMouse.o -c recombRateMouse.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o refLink.o -c refLink.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o refSeqStatus.o -c refSeqStatus.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rgdQtl.o -c rgdQtl.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o riken.o -c riken.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rhMapZfishInfo.o -c rhMapZfishInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rikenBest.o -c rikenBest.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rikenCluster.o -c rikenCluster.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rmskOut.o -c rmskOut.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rnaFold.o -c rnaFold.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rnaGene.o -c rnaGene.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rnaGroup.o -c rnaGroup.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rnaHybridization.o -c rnaHybridization.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rnaPLFold.o -c rnaPLFold.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tRNAs.o -c tRNAs.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gbRNAs.o -c gbRNAs.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snoRNAs.o -c snoRNAs.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o lowelabPfamHit.o -c lowelabPfamHit.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o lowelabArkinOperonScore.o -c lowelabArkinOperonScore.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o lowelabTIGROperonScore.o -c lowelabTIGROperonScore.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rnaSecStr.o -c rnaSecStr.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tfbsConsFactors.o -c tfbsConsFactors.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o retroMrnaInfo.o -c retroMrnaInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o roughAli.o -c roughAli.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o transMapStuff.o -c transMapStuff.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o transMapInfo.o -c transMapInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o transMapGene.o -c transMapGene.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o transMapSrc.o -c transMapSrc.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sage.o -c sage.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sageCounts.o -c sageCounts.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sageExp.o -c sageExp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sample.o -c sample.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sqlProg.o -c sqlProg.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tfbsCons.o -c tfbsCons.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tfbsConsSites.o -c tfbsConsSites.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sanger22extra.o -c sanger22extra.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sangerGene.o -c sangerGene.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sangerGeneToWBGeneID.o -c sangerGeneToWBGeneID.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sargassoSeaXra.o -c sargassoSeaXra.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o scopDes.o -c scopDes.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o scoredRef.o -c scoredRef.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sgdAbundance.o -c sgdAbundance.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sgdClone.o -c sgdClone.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sgdDescription.o -c sgdDescription.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sgdOther.o -c sgdOther.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o simpleNucDiff.o -c simpleNucDiff.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o simpleRepeat.o -c simpleRepeat.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snp.o -c snp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snp125.o -c snp125.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snp125CodingCoordless.o -c snp125CodingCoordless.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snpExceptions.o -c snpExceptions.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snpFasta.o -c snpFasta.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snpMap.o -c snpMap.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snpTmp.o -c snpTmp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snpUi.o -c snpUi.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snp125Exceptions.o -c snp125Exceptions.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snp125Ui.o -c snp125Ui.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o softPromoter.o -c softPromoter.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o softberryHom.o -c softberryHom.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o spDb.o -c spDb.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o splignAlign.o -c splignAlign.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stanMad.o -c stanMad.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsAlias.o -c stsAlias.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsInfo.o -c stsInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsInfo2.o -c stsInfo2.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsInfoMouse.o -c stsInfoMouse.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsInfoMouseNew.o -c stsInfoMouseNew.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsInfoRat.o -c stsInfoRat.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsMap.o -c stsMap.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsMapMouse.o -c stsMapMouse.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsMapMouseNew.o -c stsMapMouseNew.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsMapRat.o -c stsMapRat.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsMarker.o -c stsMarker.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o switchDbTss.o -c switchDbTss.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o synMap.o -c synMap.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o synteny100000.o -c synteny100000.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o syntenyBerk.o -c syntenyBerk.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o syntenySanger.o -c syntenySanger.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tableDescriptions.o -c tableDescriptions.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tableStatus.o -c tableStatus.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o targetDb.o -c targetDb.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tfbsConsMap.o -c tfbsConsMap.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o taxonDivision.o -c taxonDivision.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o taxonGeneticCode.o -c taxonGeneticCode.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o taxonName.o -c taxonName.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o taxonNode.o -c taxonNode.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o taxonXref.o -c taxonXref.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tigrCmrGene.o -c tigrCmrGene.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tigrOperon.o -c tigrOperon.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tilingPath.o -c tilingPath.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o traceInfo.o -c traceInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o trackDb.o -c trackDb.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o trackDbCustom.o -c trackDbCustom.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o trackLayout.o -c trackLayout.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o trackTable.o -c trackTable.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o trackVersion.o -c trackVersion.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o trashDir.o -c trashDir.c trashDir.c: In function ‘copyFileToTrash’: trashDir.c:58:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o transRegCode.o -c transRegCode.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o transRegCodeCondition.o -c transRegCodeCondition.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o transRegCodeProbe.o -c transRegCodeProbe.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o txCluster.o -c txCluster.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o txCommon.o -c txCommon.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o txEdgeBed.o -c txEdgeBed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o txEdgeOrtho.o -c txEdgeOrtho.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o txGraph.o -c txGraph.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o txInfo.o -c txInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o txRnaAccs.o -c txRnaAccs.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o validateGisaid.o -c validateGisaid.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o vegaInfo.o -c vegaInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o vegaInfoZfish.o -c vegaInfoZfish.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o visiGene.o -c visiGene.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o vntr.o -c vntr.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wabAli.o -c wabAli.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o web.o -c web.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ncRna.o -c ncRna.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wgRna.o -c wgRna.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wigAsciiToBinary.o -c wigAsciiToBinary.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wigDataStream.o -c wigDataStream.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wiggle.o -c wiggle.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wiggleCart.o -c wiggleCart.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wiggleUtils.o -c wiggleUtils.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wikiLink.o -c wikiLink.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wikiTrack.o -c wikiTrack.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o zdobnovSynt.o -c zdobnovSynt.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o oreganno.o -c oreganno.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o oregannoUi.o -c oregannoUi.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gvUi.o -c gvUi.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gv.o -c gv.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o omicia.o -c omicia.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o protVar.o -c protVar.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pgSnp.o -c pgSnp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o alignInfo.o -c alignInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cddInfo.o -c cddInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o loweutils.o -c loweutils.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cddDesc.o -c cddDesc.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o arCOGs.o -c arCOGs.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o arcogdesc.o -c arcogdesc.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o megablastInfo.o -c megablastInfo.c ar rcus ../../lib/i686/jkhgap.a acemblyClass.o affyAllExonProbe.o affyAtlas.o affy10KDetails.o affy120KDetails.o affyOffset.o affyPairs.o agp.o agpFrag.o agpGap.o alignSeqSizes.o altGraph.o altGraphX.o ancientRref.o atomDb.o axtInfo.o axtLib.o bactigPos.o bamFile.o baseMaskCommon.o bdgpExprLink.o bdgpGeneInfo.o bed.o bed5FloatScore.o bed5Pval.o bed6FloatScore.o bed12Source.o bed12wSeq.o bedCart.o bgiGeneInfo.o bgiGeneSnp.o bgiSnp.o bioImage.o blastTab.o blastzNet.o blatServers.o borf.o borkPseudoHom.o botDelay.o cart.o cartDb.o cdsEvidence.o cdsOrtho.o cdsPick.o cdsSpec.o ccdsInfo.o ccdsGeneMap.o celeraCoverage.o celeraDupPositive.o cgapSage/cgapSage.o cgapSage/cgapSageLib.o cgh.o chainCart.o chainDb.o chainLink.o chainNet.o chainNetDbLoad.o chicken13kInfo.o chromBins.o chr18deletions.o chromGraph.o chromGraphFactory.o chromInfo.o chromInserts.o chromKeeper.o clonePos.o codeBlast.o codeBlastScore.o cogs.o cogsxra.o columnInfo.o contigAcc.o coordConv.o cnpIafrate.o cnpIafrate2.o cnpLocke.o cnpRedon.o cnpSebat.o cnpSebat2.o cnpSharp2.o cnpSharpCutoff.o cnpSharpSample.o cnpSharp.o cpgIsland.o cpgIslandExt.o ctgPos.o ctgPos2.o customFactory.o customPp.o customTrack.o cutter.o cytoBand.o dbDb.o dbRIP.o dbSnpRs.o defaultDb.o delConrad2.o delHinds2.o dgv.o dless.o dnaMotifSql.o dnaProbe.o dv.o dvBed.o dvXref2.o easyGene.o ec.o ecCode.o ecAttribute.o ecAttributeCode.o encode/encodeErge.o encode/encodeErgeHssCellLines.o encode/encodeHapMapAlleleFreq.o encode/encodeIndels.o encode/encodePeak.o encode/encodeRegionInfo.o encode/encodeRegionInfoCustom.o encode/encodeRna.o encode/encodeStanfordPromoters.o encode/encodeStanfordPromotersAverage.o encode/pairedTagAlign.o encode/tagAlign.o ensFace.o ensInfo.o ensPhusionBlast.o ensXRefZfish.o est3.o estOrientInfo.o estPair.o exoFish.o expData.o expRecord.o exprBed.o fbTables.o featureBits.o findKGAlias.o findKGProtAlias.o fishClones.o flyBase2004Xref.o flyBaseSwissProt.o flyreg.o flyreg2.o gbExtFile.o gbWarn.o gbMiscDiff.o gbProtAnn.o gcPercent.o gbSeq.o genbank.o gencodeGeneClass.o gencodeIntron.o genMapDb.o geneBands.o geneCheck.o geneCheckDetails.o geneCheckWidget.o geneGraph.o genePred.o genePredReader.o geneSimilarities.o genoLay.o genomeRangeTreeFile.o genomicDups.o genomicSuperDups.o ggCluster.o ggDbIo.o ggDump.o ggGraph.o ggMrnaAli.o ggTypes.o glDbRep.o goa.o goaPart.o googleAnalytics.o growthCondition.o grp.o hapmapAllelesOrtho.o hapmapAllelesSummary.o hapmapPhaseIIISummary.o hapmapSnps.o hapmapSnpsCombined.o hCommon.o hCytoBand.o hdb.o hgColors.o hgConfig.o hgExp.o hgFind.o hgFindSpec.o hgFindSpecCustom.o hgGene.o hgMaf.o hgRelate.o hgSeq.o hgdpGeo.o hPrint.o hVarSubst.o hvGfx.o HInv.o hui.o humanParalog.o imageClone.o isochores.o ispyTables.o itemAttr.o itemConf.o jalview.o jaxOrtholog.o jaxQTL.o jaxQTL3.o jksql.o joiner.o jsHelper.o kg1ToKg2.o jgiGene.o kgAlias.o kgColor.o kgProtAlias.o kgXref.o knownInfo.o knownMore.o knownToSuper.o ld.o ld2.o lfs.o liftOver.o liftOverChain.o liftUp.o llaInfo.o lsSnpPdb.o lsSnpPdbChimera.o mafFrames.o mafGene.o mafSummary.o mammalPsg.o mapSts.o mcnBreakpoints.o metaChromGraph.o microarray.o minChromSize.o minGeneInfo.o mrnaMisMatch.o mouseOrtho.o mouseSyn.o mouseSynWhd.o mysqlTableStatus.o netAlign.o netCart.o nonCodingUi.o omimTitle.o ooUtils.o orthoAlleles.o pal.o pbStamp.o pcrResult.o pepPred.o plasEndPairs.o polyGenotype.o protFeat.o pscreen.o pseudoGeneLink.o pslReader.o pslWScore.o putaInfo.o qaSeq.o rangeTreeFile.o rankProp.o recombRate.o recombRateRat.o recombRateMouse.o refLink.o refSeqStatus.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o riken.o rhMapZfishInfo.o rikenBest.o rikenCluster.o rmskOut.o rnaFold.o rnaGene.o rnaGroup.o rnaHybridization.o rnaPLFold.o tRNAs.o gbRNAs.o snoRNAs.o lowelabPfamHit.o lowelabArkinOperonScore.o lowelabTIGROperonScore.o rnaSecStr.o tfbsConsFactors.o retroMrnaInfo.o roughAli.o transMapStuff.o transMapInfo.o transMapGene.o transMapSrc.o sage.o sageCounts.o sageExp.o sample.o sqlProg.o tfbsCons.o tfbsConsSites.o sanger22extra.o sangerGene.o sangerGeneToWBGeneID.o sargassoSeaXra.o scopDes.o scoredRef.o sgdAbundance.o sgdClone.o sgdDescription.o sgdOther.o simpleNucDiff.o simpleRepeat.o snp.o snp125.o snp125CodingCoordless.o snpExceptions.o snpFasta.o snpMap.o snpTmp.o snpUi.o snp125Exceptions.o snp125Ui.o softPromoter.o softberryHom.o spDb.o splignAlign.o stanMad.o stsAlias.o stsInfo.o stsInfo2.o stsInfoMouse.o stsInfoMouseNew.o stsInfoRat.o stsMap.o stsMapMouse.o stsMapMouseNew.o stsMapRat.o stsMarker.o switchDbTss.o synMap.o synteny100000.o syntenyBerk.o syntenySanger.o tableDescriptions.o tableStatus.o targetDb.o tfbsConsMap.o taxonDivision.o taxonGeneticCode.o taxonName.o taxonNode.o taxonXref.o tigrCmrGene.o tigrOperon.o tilingPath.o traceInfo.o trackDb.o trackDbCustom.o trackLayout.o trackTable.o trackVersion.o trashDir.o transRegCode.o transRegCodeCondition.o transRegCodeProbe.o txCluster.o txCommon.o txEdgeBed.o txEdgeOrtho.o txGraph.o txInfo.o txRnaAccs.o validateGisaid.o vegaInfo.o vegaInfoZfish.o visiGene.o vntr.o wabAli.o web.o ncRna.o wgRna.o wigAsciiToBinary.o wigDataStream.o wiggle.o wiggleCart.o wiggleUtils.o wikiLink.o wikiTrack.o zdobnovSynt.o oreganno.o oregannoUi.o gvUi.o gv.o omicia.o protVar.o pgSnp.o alignInfo.o cddInfo.o loweutils.o cddDesc.o arCOGs.o arcogdesc.o megablastInfo.o make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib' cd protein/lib && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/lib' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pbUtil.o -c pbUtil.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o doStamps.o -c doStamps.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o doTracks.o -c doTracks.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o domains.o -c domains.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o spKgMap.o -c spKgMap.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o doSam.o -c doSam.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o uniref.o -c uniref.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o unirefTbl.o -c unirefTbl.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o spMapper.o -c spMapper.c ar rcus ../../../lib/i686/jkpbap.a pbUtil.o doStamps.o doTracks.o domains.o spKgMap.o doSam.o uniref.o unirefTbl.o spMapper.o make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/lib' ( cd affyTransciptome && echo affyTransciptome && make ) affyTransciptome make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/affyTransciptome' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit -I../inc -I../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/affyPairsToSample affyPairsToSample.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit -I../inc -I../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/normalizeSampleFile normalizeSampleFile.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit -I../inc -I../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/avgTranscriptomeExps avgTranscriptomeExps.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit -I../inc -I../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/maxTranscriptomeExps maxTranscriptomeExps.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit -I../inc -I../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/scaleSampleFiles scaleSampleFiles.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit -I../inc -I../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/averageZoomLevels averageZoomLevels.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit -I../inc -I../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/groupSamples groupSamples.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/affyTransciptome' ( cd agpCloneCheck && echo agpCloneCheck && make ) agpCloneCheck make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpCloneCheck' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o agpCloneCheck.o -c agpCloneCheck.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpCloneCheck agpCloneCheck.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpCloneCheck' ( cd agpCloneList && echo agpCloneList && make ) agpCloneList make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpCloneList' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o agpCloneList.o -c agpCloneList.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpCloneList agpCloneList.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpCloneList' ( cd agpAllToFaFile && echo agpAllToFaFile && make ) agpAllToFaFile make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpAllToFaFile' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o agpAllToFaFile.o -c agpAllToFaFile.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpAllToFaFile agpAllToFaFile.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpAllToFaFile' ( cd agpToFa && echo agpToFa && make ) agpToFa make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpToFa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o agpToFa.o -c agpToFa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToFa \ agpToFa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToFa skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToFa make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpToFa' ( cd agpToGl && echo agpToGl && make ) agpToGl make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpToGl' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o agpToGl.o -c agpToGl.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToGl agpToGl.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToGl skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToGl make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpToGl' ( cd altSplice && echo altSplice && make ) altSplice make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice' cd lib; make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice/lib' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spliceGraph.o -c spliceGraph.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o exonGraph.o -c exonGraph.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o heap.o -c heap.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o altSpliceSite.o -c altSpliceSite.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pfamDat.o -c pfamDat.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o affyProbe.o -c affyProbe.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o altProbe.o -c altProbe.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dMatrix.o -c dMatrix.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o splice.o -c splice.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mouseAPSetEventMap.o -c mouseAPSetEventMap.c ar rcu ./i686/libSpliceGraph.a spliceGraph.o exonGraph.o heap.o altSpliceSite.o pfamDat.o affyProbe.o altProbe.o dMatrix.o splice.o mouseAPSetEventMap.o ranlib ./i686/libSpliceGraph.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice/lib' cd altSplice; make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice/altSplice' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sequenceForBed sequenceForBed.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/altAnalysis altAnalysis.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/altSplice altSplice.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orthoSplice orthoSplice.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agxToBed agxToBed.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/altSummary altSummary.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedInGraph bedInGraph.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/consForBed consForBed.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/altPaths altPaths.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToExons bedToExons.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredToPsl genePredToPsl.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice/altSplice' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice' ( cd autoDtd && echo autoDtd && make ) autoDtd make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoDtd' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o autoDtd.o -c autoDtd.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoDtd autoDtd.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoDtd skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoDtd make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoDtd' ( cd autoSql && echo autoSql && make ) autoSql make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoSql' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o autoSql.o -c autoSql.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o autoSql autoSql.o ../../lib/i686/jkweb.a -lm rm -f /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoSql cp -p autoSql /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoSql make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoSql' ( cd autoXml && echo autoXml && make ) autoXml make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoXml' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o autoXml.o -c autoXml.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoXml autoXml.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoXml' ( cd bedOrBlocks && echo bedOrBlocks && make ) bedOrBlocks make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedOrBlocks' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bedOrBlocks.o -c bedOrBlocks.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedOrBlocks bedOrBlocks.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedOrBlocks skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedOrBlocks make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedOrBlocks' ( cd bedIntersect && echo bedIntersect && make ) bedIntersect make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedIntersect' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bedIntersect.o -c bedIntersect.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedIntersect bedIntersect.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedIntersect' ( cd bedItemOverlapCount && echo bedItemOverlapCount && make ) bedItemOverlapCount make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedItemOverlapCount' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bedItemOverlapCount.o -c bedItemOverlapCount.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedItemOverlapCount bedItemOverlapCount.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedItemOverlapCount skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedItemOverlapCount make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedItemOverlapCount' ( cd bedSort && echo bedSort && make ) bedSort make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedSort' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bedSort.o -c bedSort.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedSort bedSort.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedSort' ( cd bedToGenePred && echo bedToGenePred && make ) bedToGenePred make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedToGenePred' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bedToGenePred.o -c bedToGenePred.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToGenePred bedToGenePred.o ../../lib/i686/jkhgap.a ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedToGenePred' ( cd bedSplitOnChrom && echo bedSplitOnChrom && make ) bedSplitOnChrom make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedSplitOnChrom' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bedSplitOnChrom.o -c bedSplitOnChrom.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedSplitOnChrom bedSplitOnChrom.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedSplitOnChrom skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedSplitOnChrom make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedSplitOnChrom' ( cd blastToPsl && echo blastToPsl && make ) blastToPsl make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/blastToPsl' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o blastToPsl.o -c blastToPsl.c i686-pc-linux-gnu-gcc -O2 -pipe -o blastToPsl blastToPsl.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm cp -f blastToPsl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blastToPsl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blastToPsl skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blastToPsl i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslUniq.o -c pslUniq.c i686-pc-linux-gnu-gcc -O2 -pipe pslUniq.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm mv a.out pslUniq cp -f pslUniq /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslUniq echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslUniq skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslUniq make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/blastToPsl' ( cd borfBig && echo borfBig && make ) borfBig make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/borfBig' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o borfBig.o -c borfBig.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/borfBig borfBig.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/borfBig skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/borfBig make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/borfBig' ( cd checkHgFindSpec && echo checkHgFindSpec && make ) checkHgFindSpec make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/checkHgFindSpec' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o checkHgFindSpec.o -c checkHgFindSpec.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o checkHgFindSpec checkHgFindSpec.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm mv checkHgFindSpec /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkHgFindSpec make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/checkHgFindSpec' ( cd checkTableCoords && echo checkTableCoords && make ) checkTableCoords make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/checkTableCoords' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o checkTableCoords.o -c checkTableCoords.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o checkTableCoords checkTableCoords.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' checkTableCoords skipping strip checkTableCoords mv checkTableCoords /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkTableCoords make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/checkTableCoords' ( cd ctgFaToFa && echo ctgFaToFa && make ) ctgFaToFa make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ctgFaToFa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ctgFaToFa.o -c ctgFaToFa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ctgFaToFa ctgFaToFa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ctgFaToFa' ( cd ctgToChromFa && echo ctgToChromFa && make ) ctgToChromFa make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ctgToChromFa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ctgToChromFa.o -c ctgToChromFa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ctgToChromFa ctgToChromFa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ctgToChromFa skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ctgToChromFa make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ctgToChromFa' ( cd dbTrash && echo dbTrash && make ) dbTrash make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/dbTrash' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dbTrash.o -c dbTrash.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbTrash dbTrash.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbTrash skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbTrash make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/dbTrash' ( cd estOrient && echo estOrient && make ) estOrient make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/estOrient' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o estOrient.o -c estOrient.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o estOrient estOrient.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm cp -f estOrient /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/estOrient make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/estOrient' ( cd embossToPsl && echo embossToPsl && make ) embossToPsl make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/embossToPsl' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o embossToPsl.o -c embossToPsl.c i686-pc-linux-gnu-gcc -O2 -pipe -o embossToPsl embossToPsl.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm mkdir -p /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin cp -f embossToPsl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/embossToPsl skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/embossToPsl make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/embossToPsl' ( cd encode/validateFiles && echo encode/validateFiles && make ) encode/validateFiles make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/validateFiles' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o validateFiles.o -c validateFiles.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/validateFiles validateFiles.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/validateFiles skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/validateFiles make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/validateFiles' ( cd fakeFinContigs && echo fakeFinContigs && make ) fakeFinContigs make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fakeFinContigs' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fakeFinContigs.o -c fakeFinContigs.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fakeFinContigs fakeFinContigs.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fakeFinContigs' ( cd fakeOut && echo fakeOut && make ) fakeOut make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fakeOut' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fakeOut.o -c fakeOut.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fakeOut fakeOut.o ../../lib/i686/jkweb.a make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fakeOut' ( cd featureBits && echo featureBits && make ) featureBits make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/featureBits' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o featureBits.o -c featureBits.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/featureBits featureBits.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/featureBits skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/featureBits make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/featureBits' ( cd ffaToFa && echo ffaToFa && make ) ffaToFa make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ffaToFa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ffaToFa.o -c ffaToFa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ffaToFa ffaToFa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ffaToFa' ( cd fishClones && echo fishClones && make ) fishClones make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fishClones' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fishClones.o -c fishClones.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized fishClones.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm mv a.out fishClones echo 'skipping strip' fishClones skipping strip fishClones chmod a+rx fishClones cp fishClones /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fishClones' ( cd fqToQa && echo fqToQa && make ) fqToQa make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fqToQa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fqToQa.o -c fqToQa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fqToQa fqToQa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fqToQa skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fqToQa make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fqToQa' ( cd fqToQac && echo fqToQac && make ) fqToQac make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fqToQac' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fqToQac.o -c fqToQac.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fqToQac fqToQac.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fqToQac' ( cd fragPart && echo fragPart && make ) fragPart make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fragPart' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fragPart.o -c fragPart.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fragPart fragPart.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fragPart skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fragPart make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fragPart' ( cd gbGetEntries && echo gbGetEntries && make ) gbGetEntries make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbGetEntries' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gbGetEntries.o -c gbGetEntries.c i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gbGetEntries gbGetEntries.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbGetEntries' ( cd gbOneAcc && echo gbOneAcc && make ) gbOneAcc make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbOneAcc' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gbOneAcc.o -c gbOneAcc.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gbOneAcc gbOneAcc.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbOneAcc' ( cd gbToFaRa && echo gbToFaRa && make ) gbToFaRa make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbToFaRa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gbToFaRa.o -c gbToFaRa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gbToFaRa gbToFaRa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbToFaRa' ( cd geneBounds && echo geneBounds && make ) geneBounds make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds' ( cd assessLibs && echo assessLibs && make ) assessLibs make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/assessLibs' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o assessLibs.o -c assessLibs.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/assessLibs assessLibs.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/assessLibs skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/assessLibs make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/assessLibs' ( cd averagExp && echo averagExp && make ) averagExp make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/averagExp' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o averagExp.o -c averagExp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/averagExp averagExp.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/averagExp skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/averagExp make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/averagExp' ( cd axtForEst && echo axtForEst && make ) axtForEst make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/axtForEst' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtForEst.o -c axtForEst.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtForEst axtForEst.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/axtForEst' ( cd bedCons && echo bedCons && make ) bedCons make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/bedCons' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bedCons.o -c bedCons.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedCons bedCons.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/bedCons' ( cd checkableBorf && echo checkableBorf && make ) checkableBorf make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/checkableBorf' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o checkableBorf.o -c checkableBorf.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkableBorf checkableBorf.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkableBorf skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkableBorf make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/checkableBorf' ( cd clusterGenes && echo clusterGenes && make ) clusterGenes make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterGenes' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o clusterGenes.o -c clusterGenes.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterGenes clusterGenes.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterGenes skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterGenes make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterGenes' ( cd clusterPsl && echo clusterPsl && make ) clusterPsl make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterPsl' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o clusterPsl.o -c clusterPsl.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterPsl clusterPsl.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterPsl skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterPsl make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterPsl' ( cd clusterRna && echo clusterRna && make ) clusterRna make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterRna' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o clusterRna.o -c clusterRna.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterRna clusterRna.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterRna' ( cd dnaMotifFind && echo dnaMotifFind && make ) dnaMotifFind make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/dnaMotifFind' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnaMotifFind.o -c dnaMotifFind.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dnaMotifFind dnaMotifFind.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dnaMotifFind skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dnaMotifFind make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/dnaMotifFind' ( cd eisenInput && echo eisenInput && make ) eisenInput make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/eisenInput' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o eisenInput.o -c eisenInput.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/eisenInput eisenInput.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/eisenInput skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/eisenInput make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/eisenInput' ( cd emblMatrixToMotif && echo emblMatrixToMotif && make ) emblMatrixToMotif make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/emblMatrixToMotif' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o emblMatrixToMotif.o -c emblMatrixToMotif.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/emblMatrixToMotif emblMatrixToMotif.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/emblMatrixToMotif skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/emblMatrixToMotif make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/emblMatrixToMotif' ( cd estLibStats && echo estLibStats && make ) estLibStats make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/estLibStats' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o estLibStats.o -c estLibStats.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/estLibStats estLibStats.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/estLibStats skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/estLibStats make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/estLibStats' ( cd expToRna && echo expToRna && make ) expToRna make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/expToRna' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o expToRna.o -c expToRna.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/expToRna expToRna.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/expToRna skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/expToRna make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/expToRna' ( cd iriToControlTable && echo iriToControlTable && make ) iriToControlTable make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/iriToControlTable' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o iriToControlTable.o -c iriToControlTable.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ../lib/improbRunInfo.o -c ../lib/improbRunInfo.c cd ../lib && make make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib' echo all done all done make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToControlTable iriToControlTable.o ../lib/improbRunInfo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToControlTable skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToControlTable make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/iriToControlTable' ( cd iriToDnaMotif && echo iriToDnaMotif && make ) iriToDnaMotif make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/iriToDnaMotif' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o iriToDnaMotif.o -c iriToDnaMotif.c cd ../lib && make make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib' echo all done all done make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToDnaMotif iriToDnaMotif.o ../lib/improbRunInfo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToDnaMotif skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToDnaMotif make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/iriToDnaMotif' ( cd lib && echo lib && make ) lib make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib' echo all done all done make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib' ( cd liftPromoHits && echo liftPromoHits && make ) liftPromoHits make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/liftPromoHits' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o liftPromoHits.o -c liftPromoHits.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftPromoHits liftPromoHits.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftPromoHits skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftPromoHits make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/liftPromoHits' ( cd motifLogo && echo motifLogo && make ) motifLogo make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/motifLogo' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o motifLogo.o -c motifLogo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifLogo motifLogo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifLogo skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifLogo make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/motifLogo' ( cd motifSig && echo motifSig && make ) motifSig make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/motifSig' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o motifSig.o -c motifSig.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifSig motifSig.o ../lib/improbRunInfo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifSig skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifSig make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/motifSig' ( cd orf && echo orf && make ) orf make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/orf' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o orf.o -c orf.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orf orf.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orf skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orf make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/orf' ( cd orfStats && echo orfStats && make ) orfStats make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/orfStats' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o orfStats.o -c orfStats.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orfStats orfStats.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orfStats skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orfStats make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/orfStats' ( cd polyInfo && echo polyInfo && make ) polyInfo make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/polyInfo' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o polyInfo.o -c polyInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/polyInfo polyInfo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/polyInfo' ( cd promoSeqFromCluster && echo promoSeqFromCluster && make ) promoSeqFromCluster make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/promoSeqFromCluster' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o promoSeqFromCluster.o -c promoSeqFromCluster.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/promoSeqFromCluster promoSeqFromCluster.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/promoSeqFromCluster skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/promoSeqFromCluster make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/promoSeqFromCluster' ( cd raToCds && echo raToCds && make ) raToCds make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/raToCds' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o raToCds.o -c raToCds.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToCds raToCds.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToCds skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToCds make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/raToCds' ( cd twinOrf && echo twinOrf && make ) twinOrf make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o twinOrf.o -c twinOrf.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf twinOrf.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf' ( cd twinOrf2 && echo twinOrf2 && make ) twinOrf2 make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf2' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o twinOrf2.o -c twinOrf2.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf2 twinOrf2.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf2' ( cd twinOrf3 && echo twinOrf3 && make ) twinOrf3 make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf3' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o twinOrf3.o -c twinOrf3.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf3 twinOrf3.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf3 skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf3 make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf3' ( cd twinOrfStats && echo twinOrfStats && make ) twinOrfStats make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o twinOrfStats.o -c twinOrfStats.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats twinOrfStats.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats' ( cd twinOrfStats2 && echo twinOrfStats2 && make ) twinOrfStats2 make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats2' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o twinOrfStats2.o -c twinOrfStats2.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats2 twinOrfStats2.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats2 skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats2 make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats2' ( cd twinOrfStats3 && echo twinOrfStats3 && make ) twinOrfStats3 make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats3' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o twinOrfStats3.o -c twinOrfStats3.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats3 twinOrfStats3.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats3 skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats3 make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats3' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds' ( cd genePredCheck && echo genePredCheck && make ) genePredCheck make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredCheck' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o genePredCheck.o -c genePredCheck.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredCheck genePredCheck.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredCheck' ( cd genePredHisto && echo genePredHisto && make ) genePredHisto make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredHisto' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o genePredHisto.o -c genePredHisto.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredHisto genePredHisto.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredHisto' ( cd genePredSingleCover && echo genePredSingleCover && make ) genePredSingleCover make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredSingleCover' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o geneScore.o -c geneScore.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o genePredSingleCover.o -c genePredSingleCover.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredSingleCover geneScore.o genePredSingleCover.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredSingleCover' ( cd genePredToGtf && echo genePredToGtf && make ) genePredToGtf make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredToGtf' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o genePredToGtf.o -c genePredToGtf.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredToGtf genePredToGtf.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredToGtf skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredToGtf make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredToGtf' ( cd genePredToFakePsl && echo genePredToFakePsl && make ) genePredToFakePsl make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredToFakePsl' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o genePredToFakePsl.o -c genePredToFakePsl.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredToFakePsl genePredToFakePsl.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredToFakePsl' ( cd genePredToMafFrames && echo genePredToMafFrames && make ) genePredToMafFrames make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredToMafFrames' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o orgGenes.o -c orgGenes.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mkMafFrames.o -c mkMafFrames.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o splitMultiMappings.o -c splitMultiMappings.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o finishMafFrames.o -c finishMafFrames.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o genePredToMafFrames.o -c genePredToMafFrames.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredToMafFrames orgGenes.o mkMafFrames.o splitMultiMappings.o finishMafFrames.o genePredToMafFrames.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredToMafFrames' ( cd getFeatDna && echo getFeatDna && make ) getFeatDna make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/getFeatDna' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o getFeatDna.o -c getFeatDna.c i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/getFeatDna getFeatDna.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/getFeatDna' ( cd getRna && echo getRna && make ) getRna make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/getRna' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o getRna.o -c getRna.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/getRna getRna.o ../../lib/i686/jkhgap.a ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/getRna' ( cd getRnaPred && echo getRnaPred && make ) getRnaPred make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/getRnaPred' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o getRnaPred.o -c getRnaPred.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/getRnaPred getRnaPred.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/getRnaPred skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/getRnaPred make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/getRnaPred' ( cd gigAssembler/checkAgpAndFa && echo gigAssembler/checkAgpAndFa && make ) gigAssembler/checkAgpAndFa make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gigAssembler/checkAgpAndFa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o checkAgpAndFa.o -c checkAgpAndFa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkAgpAndFa checkAgpAndFa.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkAgpAndFa skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkAgpAndFa make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gigAssembler/checkAgpAndFa' ( cd gpStats && echo gpStats && make ) gpStats make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gpStats' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gpStats.o -c gpStats.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gpStats gpStats.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gpStats skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gpStats make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gpStats' ( cd gpToGtf && echo gpToGtf && make ) gpToGtf make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gpToGtf' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gpToGtf.o -c gpToGtf.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gpToGtf gpToGtf.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gpToGtf skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gpToGtf make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gpToGtf' ( cd gpcrParser && echo gpcrParser && make ) gpcrParser make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gpcrParser' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gpcrParser.o -c gpcrParser.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o gpcrParser gpcrParser.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm mv gpcrParser /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gpcrParser' ( cd gsBig && echo gsBig && make ) gsBig make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gsBig' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gsBig.o -c gsBig.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gsBig gsBig.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gsBig' ( cd hgTablesTest && echo hgTablesTest && make ) hgTablesTest make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTablesTest' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgTablesTest.o -c hgTablesTest.c i686-pc-linux-gnu-gcc -O2 -pipe -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgTablesTest hgTablesTest.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgTablesTest skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgTablesTest make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTablesTest' ( cd hgChroms && echo hgChroms && make ) hgChroms make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgChroms' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgChroms.o -c hgChroms.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o hgChroms hgChroms.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm mkdir -p /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin cp -f hgChroms /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgChroms skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgChroms make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgChroms' ( cd hgGetAnn && echo hgGetAnn && make ) hgGetAnn make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGetAnn' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgGetAnn.o -c hgGetAnn.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGetAnn hgGetAnn.o ../../lib/i686/jkhgap.a ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGetAnn' ( cd hgKnownGeneList && echo hgKnownGeneList && make ) hgKnownGeneList make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgKnownGeneList' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgKnownGeneList.o -c hgKnownGeneList.c i686-pc-linux-gnu-gcc -O2 -pipe -o hgKnownGeneList hgKnownGeneList.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm rm -f /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKnownGeneList mv hgKnownGeneList /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKnownGeneList make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgKnownGeneList' ( cd hgSelect && echo hgSelect && make ) hgSelect make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgSelect' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgSelect.o -c hgSelect.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSelect hgSelect.o ../../lib/i686/jkhgap.a ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgSelect' ( cd hgSpeciesRna && echo hgSpeciesRna && make ) hgSpeciesRna make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgSpeciesRna' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgSpeciesRna.o -c hgSpeciesRna.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSpeciesRna hgSpeciesRna.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSpeciesRna skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSpeciesRna make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgSpeciesRna' ( cd hgsql && echo hgsql && make ) hgsql make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsql' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgsql.o -c hgsql.c i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsql hgsql.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsql skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsql make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsql' ( cd hgsqlLocal && echo hgsqlLocal && make ) hgsqlLocal make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqlLocal' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgsqlLocal.o -c hgsqlLocal.c i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqlLocal hgsqlLocal.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqlLocal skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqlLocal make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqlLocal' ( cd hgsqladmin && echo hgsqladmin && make ) hgsqladmin make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqladmin' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgsqladmin.o -c hgsqladmin.c i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqladmin hgsqladmin.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqladmin skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqladmin make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqladmin' ( cd hgsqldump && echo hgsqldump && make ) hgsqldump make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqldump' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgsqldump.o -c hgsqldump.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqldump hgsqldump.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqldump skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqldump make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqldump' ( cd hgsqldumpLocal && echo hgsqldumpLocal && make ) hgsqldumpLocal make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqldumpLocal' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgsqldumpLocal.o -c hgsqldumpLocal.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqldumpLocal hgsqldumpLocal.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqldumpLocal skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqldumpLocal make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqldumpLocal' ( cd hgsqlimport && echo hgsqlimport && make ) hgsqlimport make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqlimport' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgsqlimport.o -c hgsqlimport.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqlimport hgsqlimport.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqlimport skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqlimport make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqlimport' ( cd intronEnds && echo intronEnds && make ) intronEnds make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/intronEnds' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o intronEnds.o -c intronEnds.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/intronEnds intronEnds.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/intronEnds skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/intronEnds make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/intronEnds' ( cd lib && echo lib && make ) lib make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib' make[1]: `../../lib/i686/jkhgap.a' is up to date. make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib' ( cd liftAcross && echo liftAcross && make ) liftAcross make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftAcross' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o liftAcross.o -c liftAcross.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftAcross liftAcross.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftAcross skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftAcross make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftAcross' ( cd liftAgp && echo liftAgp && make ) liftAgp make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftAgp' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -o liftAgp liftAgp.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm mv liftAgp /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftAgp' ( cd liftFrags && echo liftFrags && make ) liftFrags make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftFrags' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o liftFrags.o -c liftFrags.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftFrags liftFrags.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftFrags' ( cd liftOver && echo liftOver && make ) liftOver make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftOver' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o liftOver.o -c liftOver.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftOver liftOver.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftOver skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftOver i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o liftOverMerge.o -c liftOverMerge.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftOverMerge liftOverMerge.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftOverMerge skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftOverMerge make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftOver' ( cd liftUp && echo liftUp && make ) liftUp make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftUp' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o liftUp.o -c liftUp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftUp liftUp.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftUp' ( cd lfsOverlap && echo lfsOverlap && make ) lfsOverlap make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lfsOverlap' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o lfsOverlap.o -c lfsOverlap.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/lfsOverlap lfsOverlap.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lfsOverlap' ( cd makeDb && echo makeDb && make ) makeDb make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb' ( cd hgAar && echo hgAar && make ) hgAar make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgAar' cp -f aarToAxt /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/aarToAxt make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgAar' ( cd hgAddLiftOverChain && echo hgAddLiftOverChain && make ) hgAddLiftOverChain make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgAddLiftOverChain' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgAddLiftOverChain.o -c hgAddLiftOverChain.c i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgAddLiftOverChain hgAddLiftOverChain.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgAddLiftOverChain skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgAddLiftOverChain make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgAddLiftOverChain' ( cd hgBbiDbLink && echo hgBbiDbLink && make ) hgBbiDbLink make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgBbiDbLink' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgBbiDbLink.o -c hgBbiDbLink.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgBbiDbLink hgBbiDbLink.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgBbiDbLink skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgBbiDbLink make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgBbiDbLink' ( cd hgClonePos && echo hgClonePos && make ) hgClonePos make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgClonePos' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgClonePos.o -c hgClonePos.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gsSeqInfo.o -c gsSeqInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgClonePos hgClonePos.o gsSeqInfo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgClonePos' ( cd hgCountAlign && echo hgCountAlign && make ) hgCountAlign make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCountAlign' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o align.o -c align.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgCountAlign.o -c hgCountAlign.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o slidingWin.o -c slidingWin.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o winCounts.o -c winCounts.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgCountAlign align.o hgCountAlign.o slidingWin.o winCounts.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCountAlign' ( cd hgCtgPos && echo hgCtgPos && make ) hgCtgPos make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCtgPos' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgCtgPos.o -c hgCtgPos.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o liftSpec.o -c liftSpec.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgCtgPos hgCtgPos.o liftSpec.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCtgPos' ( cd hgDeleteChrom && echo hgDeleteChrom && make ) hgDeleteChrom make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgDeleteChrom' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgDeleteChrom.o -c hgDeleteChrom.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgDeleteChrom hgDeleteChrom.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgDeleteChrom' ( cd hgExperiment && echo hgExperiment && make ) hgExperiment make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgExperiment' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgExperiment.o -c hgExperiment.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgExperiment hgExperiment.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgExperiment skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgExperiment make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgExperiment' ( cd hgExtFileCheck && echo hgExtFileCheck && make ) hgExtFileCheck make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgExtFileCheck' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgExtFileCheck.o -c hgExtFileCheck.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgExtFileCheck hgExtFileCheck.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgExtFileCheck' ( cd hgFakeAgp && echo hgFakeAgp && make ) hgFakeAgp make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgFakeAgp' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgFakeAgp.o -c hgFakeAgp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFakeAgp hgFakeAgp.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFakeAgp skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFakeAgp make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgFakeAgp' ( cd hgFindSpec && echo hgFindSpec && make ) hgFindSpec make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgFindSpec' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgFindSpec.o -c hgFindSpec.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFindSpec hgFindSpec.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFindSpec skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFindSpec make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgFindSpec' ( cd hgGcPercent && echo hgGcPercent && make ) hgGcPercent make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGcPercent' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgGcPercent.o -c hgGcPercent.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGcPercent \ hgGcPercent.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGcPercent skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGcPercent make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGcPercent' ( cd hgGeneBands && echo hgGeneBands && make ) hgGeneBands make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGeneBands' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgGeneBands.o -c hgGeneBands.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGeneBands hgGeneBands.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGeneBands skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGeneBands make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGeneBands' ( cd hgGenericMicroarray && echo hgGenericMicroarray && make ) hgGenericMicroarray make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGenericMicroarray' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgGenericMicroarray.o -c hgGenericMicroarray.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGenericMicroarray hgGenericMicroarray.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGenericMicroarray skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGenericMicroarray make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGenericMicroarray' ( cd hgGoldGapGl && echo hgGoldGapGl && make ) hgGoldGapGl make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGoldGapGl' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgGoldGapGl.o -c hgGoldGapGl.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ntContig.o -c ntContig.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGoldGapGl \ hgGoldGapGl.o ntContig.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgLoadGap.o -c hgLoadGap.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadGap \ hgLoadGap.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGoldGapGl' ( cd hgKgGetText && echo hgKgGetText && make ) hgKgGetText make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKgGetText' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgKgGetText.o -c hgKgGetText.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKgGetText hgKgGetText.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKgGetText skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKgGetText make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKgGetText' ( cd hgKgMrna && echo hgKgMrna && make ) hgKgMrna make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKgMrna' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgKgMrna.o -c hgKgMrna.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKgMrna hgKgMrna.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKgMrna' ( cd hgKnownMore && echo hgKnownMore && make ) hgKnownMore make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKnownMore' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgKnownMore.o -c hgKnownMore.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hugoMulti.o -c hugoMulti.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKnownMore hgKnownMore.o hugoMulti.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKnownMore' ( cd hgKnownMore.oo21 && echo hgKnownMore.oo21 && make ) hgKnownMore.oo21 make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKnownMore.oo21' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgKnownMore.o -c hgKnownMore.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hugoMulti.o -c hugoMulti.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKnownMore hgKnownMore.o hugoMulti.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKnownMore.oo21' ( cd hgLoadBed && echo hgLoadBed && make ) hgLoadBed make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadBed' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgLoadBed.o -c hgLoadBed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadBed hgLoadBed.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadBed skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadBed make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadBed' ( cd hgLoadBlastTab && echo hgLoadBlastTab && make ) hgLoadBlastTab make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadBlastTab' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgLoadBlastTab.o -c hgLoadBlastTab.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadBlastTab hgLoadBlastTab.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadBlastTab skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadBlastTab make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadBlastTab' ( cd hgLoadChain && echo hgLoadChain && make ) hgLoadChain make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadChain' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgLoadChain.o -c hgLoadChain.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadChain \ hgLoadChain.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadChain skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadChain make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadChain' ( cd hgLoadChromGraph && echo hgLoadChromGraph && make ) hgLoadChromGraph make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadChromGraph' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgLoadChromGraph.o -c hgLoadChromGraph.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadChromGraph hgLoadChromGraph.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadChromGraph skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadChromGraph make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadChromGraph' ( cd hgLoadGenePred && echo hgLoadGenePred && make ) hgLoadGenePred make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadGenePred' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgLoadGenePred.o -c hgLoadGenePred.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadGenePred hgLoadGenePred.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadGenePred' ( cd hgLoadItemAttr && echo hgLoadItemAttr && make ) hgLoadItemAttr make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadItemAttr' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgLoadItemAttr.o -c hgLoadItemAttr.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadItemAttr hgLoadItemAttr.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadItemAttr skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadItemAttr make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadItemAttr' ( cd hgLoadMaf && echo hgLoadMaf && make ) hgLoadMaf make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadMaf' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgLoadMaf.o -c hgLoadMaf.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadMaf hgLoadMaf.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadMaf skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadMaf i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgLoadMafSummary.o -c hgLoadMafSummary.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadMafSummary hgLoadMafSummary.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadMafSummary skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadMafSummary make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadMaf' ( cd hgLoadMafFrames && echo hgLoadMafFrames && make ) hgLoadMafFrames make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadMafFrames' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgLoadMafFrames.o -c hgLoadMafFrames.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadMafFrames hgLoadMafFrames.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadMafFrames' ( cd hgLoadNet && echo hgLoadNet && make ) hgLoadNet make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadNet' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgLoadNet.o -c hgLoadNet.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadNet hgLoadNet.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadNet' ( cd hgLoadOut && echo hgLoadOut && make ) hgLoadOut make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadOut' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgLoadOut.o -c hgLoadOut.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadOut hgLoadOut.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadOut skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadOut make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadOut' ( cd hgLoadPsl && echo hgLoadPsl && make ) hgLoadPsl make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadPsl' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgLoadPsl.o -c hgLoadPsl.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadPsl hgLoadPsl.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadPsl' ( cd hgLoadSeq && echo hgLoadSeq && make ) hgLoadSeq make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadSeq' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgLoadSeq.o -c hgLoadSeq.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadSeq hgLoadSeq.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadSeq' ( cd hgLoadSample && echo hgLoadSample && make ) hgLoadSample make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadSample' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgLoadSample.o -c hgLoadSample.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadSample hgLoadSample.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadSample skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadSample make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadSample' ( cd hgLoadSqlTab && echo hgLoadSqlTab && make ) hgLoadSqlTab make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadSqlTab' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgLoadSqlTab.o -c hgLoadSqlTab.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadSqlTab hgLoadSqlTab.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadSqlTab skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadSqlTab make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadSqlTab' ( cd hgLoadWiggle && echo hgLoadWiggle && make ) hgLoadWiggle make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadWiggle' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgLoadWiggle.o -c hgLoadWiggle.c i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadWiggle hgLoadWiggle.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadWiggle skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadWiggle i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgWiggle.o -c hgWiggle.c i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgWiggle hgWiggle.o \ ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgWiggle skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgWiggle i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o wigEncode.o -c wigEncode.c i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wigEncode wigEncode.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wigEncode skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wigEncode make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadWiggle' ( cd hgMapMicroarray && echo hgMapMicroarray && make ) hgMapMicroarray make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgMapMicroarray' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgMapMicroarray.o -c hgMapMicroarray.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMapMicroarray hgMapMicroarray.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMapMicroarray skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMapMicroarray make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgMapMicroarray' ( cd hgMedianMicroarray && echo hgMedianMicroarray && make ) hgMedianMicroarray make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgMedianMicroarray' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgMedianMicroarray.o -c hgMedianMicroarray.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMedianMicroarray hgMedianMicroarray.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMedianMicroarray skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMedianMicroarray make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgMedianMicroarray' ( cd hgNibSeq && echo hgNibSeq && make ) hgNibSeq make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgNibSeq' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgNibSeq.o -c hgNibSeq.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgNibSeq hgNibSeq.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgNibSeq' ( cd hgPepPred && echo hgPepPred && make ) hgPepPred make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgPepPred' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgPepPred.o -c hgPepPred.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgPepPred hgPepPred.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgPepPred' ( cd hgRatioMicroarray && echo hgRatioMicroarray && make ) hgRatioMicroarray make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgRatioMicroarray' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgRatioMicroarray.o -c hgRatioMicroarray.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgRatioMicroarray hgRatioMicroarray.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgRatioMicroarray skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgRatioMicroarray make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgRatioMicroarray' ( cd hgDropSplitTable && echo hgDropSplitTable && make ) hgDropSplitTable make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgDropSplitTable' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgDropSplitTable.o -c hgDropSplitTable.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgDropSplitTable hgDropSplitTable.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgDropSplitTable skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgDropSplitTable make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgDropSplitTable' ( cd hgRenameSplitTable && echo hgRenameSplitTable && make ) hgRenameSplitTable make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgRenameSplitTable' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgRenameSplitTable.o -c hgRenameSplitTable.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgRenameSplitTable hgRenameSplitTable.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgRenameSplitTable skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgRenameSplitTable make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgRenameSplitTable' ( cd hgSanger20 && echo hgSanger20 && make ) hgSanger20 make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgSanger20' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgSanger20.o -c hgSanger20.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSanger20 hgSanger20.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSanger20 skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSanger20 make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgSanger20' ( cd hgSanger22 && echo hgSanger22 && make ) hgSanger22 make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgSanger22' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgSanger22.o -c hgSanger22.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSanger22 hgSanger22.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSanger22 skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSanger22 make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgSanger22' ( cd hgStanfordMicroarray && echo hgStanfordMicroarray && make ) hgStanfordMicroarray make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgStanfordMicroarray' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgStanfordMicroarray.o -c hgStanfordMicroarray.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgStanfordMicroarray hgStanfordMicroarray.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgStanfordMicroarray skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgStanfordMicroarray make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgStanfordMicroarray' ( cd hgStsAlias && echo hgStsAlias && make ) hgStsAlias make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgStsAlias' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgStsAlias.o -c hgStsAlias.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgStsAlias hgStsAlias.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgStsAlias' ( cd hgStsMarkers && echo hgStsMarkers && make ) hgStsMarkers make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgStsMarkers' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgStsMarkers.o -c hgStsMarkers.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgStsMarkers hgStsMarkers.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgStsMarkers' ( cd hgTomRough && echo hgTomRough && make ) hgTomRough make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgTomRough' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgTomRough.o -c hgTomRough.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o tomRough.o -c tomRough.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o hgTomRough hgTomRough.o tomRough.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgTomRough' ( cd hgTpf && echo hgTpf && make ) hgTpf make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgTpf' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgTpf.o -c hgTpf.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgTpf hgTpf.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgTpf skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgTpf make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgTpf' ( cd hgTraceInfo && echo hgTraceInfo && make ) hgTraceInfo make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgTraceInfo' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgTraceInfo.o -c hgTraceInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgTraceInfo hgTraceInfo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgTraceInfo' ( cd hgTrackDb && echo hgTrackDb && make ) hgTrackDb make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgTrackDb' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgTrackDb.o -c hgTrackDb.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgTrackDb hgTrackDb.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgTrackDb' ( cd hgWaba && echo hgWaba && make ) hgWaba make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgWaba' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgWaba.o -c hgWaba.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgWaba hgWaba.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgWaba' ( cd ldHgGene && echo ldHgGene && make ) ldHgGene make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/ldHgGene' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ldHgGene.o -c ldHgGene.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ldHgGene ldHgGene.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/ldHgGene' ( cd hgMrnaRefseq && echo hgMrnaRefseq && make ) hgMrnaRefseq make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgMrnaRefseq' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgMrnaRefseq.o -c hgMrnaRefseq.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized hgMrnaRefseq.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out hgMrnaRefseq chmod a+rx hgMrnaRefseq echo 'skipping strip' hgMrnaRefseq skipping strip hgMrnaRefseq mv hgMrnaRefseq /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMrnaRefseq make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgMrnaRefseq' ( cd schema && echo schema && make ) schema make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema' joinerCheck make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema/joinerCheck' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o joinerCheck.o -c joinerCheck.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/joinerCheck joinerCheck.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema/joinerCheck' joinableFields make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema/joinableFields' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o joinableFields.o -c joinableFields.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/joinableFields joinableFields.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/joinableFields skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/joinableFields make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema/joinableFields' makeTableDescriptions make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema/makeTableDescriptions' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o makeTableDescriptions.o -c makeTableDescriptions.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/makeTableDescriptions makeTableDescriptions.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/makeTableDescriptions skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/makeTableDescriptions make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema/makeTableDescriptions' dbFindFieldsWith make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema/dbFindFieldsWith' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dbFindFieldsWith.o -c dbFindFieldsWith.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbFindFieldsWith dbFindFieldsWith.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbFindFieldsWith skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbFindFieldsWith make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema/dbFindFieldsWith' dbSnoop make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema/dbSnoop' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dbSnoop.o -c dbSnoop.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbSnoop dbSnoop.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbSnoop skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbSnoop make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema/dbSnoop' make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema' ( cd tfbsConsLoc && echo tfbsConsLoc && make ) tfbsConsLoc make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/tfbsConsLoc' i686-pc-linux-gnu-gcc -O2 -pipe ./tfbsConsLoc.c ./matt-maf.c ./util.c ./tfbsConsLocUtil.c ./seq.c -I -g -O -w -W -lm -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/tfbsConsLoc make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/tfbsConsLoc' ( cd tfbsConsSort && echo tfbsConsSort && make ) tfbsConsSort make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/tfbsConsSort' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o tfbsConsSort.o -c tfbsConsSort.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/tfbsConsSort tfbsConsSort.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/tfbsConsSort' ( cd outside && echo outside && make ) outside make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside' ( cd allenBrain/allenCollectSeq && echo allenBrain/allenCollectSeq && make ) allenBrain/allenCollectSeq make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/allenBrain/allenCollectSeq' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o allenCollectSeq.o -c allenCollectSeq.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/allenCollectSeq allenCollectSeq.o ../../../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/allenCollectSeq skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/allenCollectSeq make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/allenBrain/allenCollectSeq' ( cd exonerateGffDoctor && echo exonerateGffDoctor && make ) exonerateGffDoctor make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/exonerateGffDoctor' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o exonerateGffDoctor.o -c exonerateGffDoctor.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/exonerateGffDoctor exonerateGffDoctor.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/exonerateGffDoctor' ( cd hgAvidShortBed && echo hgAvidShortBed && make ) hgAvidShortBed make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgAvidShortBed' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgAvidShortBed.o -c hgAvidShortBed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgAvidShortBed hgAvidShortBed.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgAvidShortBed skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgAvidShortBed make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgAvidShortBed' ( cd hgBioCyc && echo hgBioCyc && make ) hgBioCyc make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgBioCyc' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgBioCyc.o -c hgBioCyc.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized hgBioCyc.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out hgBioCyc chmod a+rx hgBioCyc echo 'skipping strip' hgBioCyc skipping strip hgBioCyc mv hgBioCyc /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgBioCyc make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgBioCyc' ( cd hgCGAP && echo hgCGAP && make ) hgCGAP make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgCGAP' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgCGAP.o -c hgCGAP.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized hgCGAP.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out hgCGAP chmod a+rx hgCGAP echo 'skipping strip' hgCGAP skipping strip hgCGAP mv hgCGAP /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgCGAP make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgCGAP' ( cd hgExonerate && echo hgExonerate && make ) hgExonerate make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgExonerate' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgExonerate.o -c hgExonerate.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgExonerate hgExonerate.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgExonerate' ( cd hgFiberglass && echo hgFiberglass && make ) hgFiberglass make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgFiberglass' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgFiberglass.o -c hgFiberglass.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFiberglass hgFiberglass.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFiberglass skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFiberglass make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgFiberglass' ( cd hgFlyBase && echo hgFlyBase && make ) hgFlyBase make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgFlyBase' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgFlyBase.o -c hgFlyBase.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFlyBase hgFlyBase.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgFlyBase' ( cd hgGnfMicroarray && echo hgGnfMicroarray && make ) hgGnfMicroarray make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgGnfMicroarray' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgGnfMicroarray.o -c hgGnfMicroarray.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGnfMicroarray hgGnfMicroarray.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGnfMicroarray skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGnfMicroarray make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgGnfMicroarray' ( cd hgJaxQtl && echo hgJaxQtl && make ) hgJaxQtl make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgJaxQtl' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgJaxQtl.o -c hgJaxQtl.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized hgJaxQtl.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out hgJaxQtl echo 'skipping strip' hgJaxQtl skipping strip hgJaxQtl chmod a+rx hgJaxQtl mv hgJaxQtl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgJaxQtl' ( cd hgKegg && echo hgKegg && make ) hgKegg make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgKegg' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgKegg.o -c hgKegg.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized hgKegg.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out hgKegg chmod a+rx hgKegg echo 'skipping strip' hgKegg skipping strip hgKegg mv hgKegg /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKegg make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgKegg' ( cd hgKegg2 && echo hgKegg2 && make ) hgKegg2 make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgKegg2' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgKegg2.o -c hgKegg2.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized hgKegg2.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out hgKegg2 chmod a+rx hgKegg2 echo 'skipping strip' hgKegg2 skipping strip hgKegg2 mv hgKegg2 /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKegg2 make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgKegg2' ( cd hgKegg3 && echo hgKegg3 && make ) hgKegg3 make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgKegg3' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgKegg3.o -c hgKegg3.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized hgKegg3.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out hgKegg3 chmod a+rx hgKegg3 echo 'skipping strip' hgKegg3 skipping strip hgKegg3 mv hgKegg3 /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKegg3 make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgKegg3' ( cd hgLoadEranModules && echo hgLoadEranModules && make ) hgLoadEranModules make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgLoadEranModules' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgLoadEranModules.o -c hgLoadEranModules.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o esMotif.o -c esMotif.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadEranModules hgLoadEranModules.o esMotif.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadEranModules skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadEranModules make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgLoadEranModules' ( cd hgLsSnpPdbLoad && echo hgLsSnpPdbLoad && make ) hgLsSnpPdbLoad make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgLsSnpPdbLoad' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgLsSnpPdbLoad.o -c hgLsSnpPdbLoad.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLsSnpPdbLoad hgLsSnpPdbLoad.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLsSnpPdbLoad skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLsSnpPdbLoad make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgLsSnpPdbLoad' ( cd hgPhMouse && echo hgPhMouse && make ) hgPhMouse make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgPhMouse' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgPhMouse.o -c hgPhMouse.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgPhMouse hgPhMouse.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgPhMouse skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgPhMouse make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgPhMouse' ( cd hgRnaGenes && echo hgRnaGenes && make ) hgRnaGenes make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgRnaGenes' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgRnaGenes.o -c hgRnaGenes.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgRnaGenes hgRnaGenes.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgRnaGenes' ( cd hgSoftPromoter && echo hgSoftPromoter && make ) hgSoftPromoter make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgSoftPromoter' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgSoftPromoter.o -c hgSoftPromoter.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSoftPromoter hgSoftPromoter.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSoftPromoter skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSoftPromoter make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgSoftPromoter' ( cd hgSoftberryHom && echo hgSoftberryHom && make ) hgSoftberryHom make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgSoftberryHom' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgSoftberryHom.o -c hgSoftberryHom.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSoftberryHom hgSoftberryHom.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgSoftberryHom' ( cd hgSuperfam && echo hgSuperfam && make ) hgSuperfam make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgSuperfam' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgSuperfam.o -c hgSuperfam.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized hgSuperfam.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out hgSuperfam chmod a+rx hgSuperfam echo 'skipping strip' hgSuperfam skipping strip hgSuperfam mv hgSuperfam /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSuperfam make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgSuperfam' ( cd nibb/nibbImageProbes && echo nibb/nibbImageProbes && make ) nibb/nibbImageProbes make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/nibb/nibbImageProbes' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o nibbImageProbes.o -c nibbImageProbes.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbImageProbes nibbImageProbes.o ../../../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbImageProbes skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbImageProbes make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/nibb/nibbImageProbes' ( cd nibb/nibbNameFix && echo nibb/nibbNameFix && make ) nibb/nibbNameFix make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/nibb/nibbNameFix' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o nibbNameFix.o -c nibbNameFix.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbNameFix nibbNameFix.o ../../../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbNameFix skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbNameFix make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/nibb/nibbNameFix' ( cd nibb/nibbParseImageDir && echo nibb/nibbParseImageDir && make ) nibb/nibbParseImageDir make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/nibb/nibbParseImageDir' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o nibbParseImageDir.o -c nibbParseImageDir.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbParseImageDir nibbParseImageDir.o ../../../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbParseImageDir skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbParseImageDir make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/nibb/nibbParseImageDir' ( cd nibb/nibbPrepImages && echo nibb/nibbPrepImages && make ) nibb/nibbPrepImages make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/nibb/nibbPrepImages' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o nibbPrepImages.o -c nibbPrepImages.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbPrepImages nibbPrepImages.o ../../../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbPrepImages skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbPrepImages make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/nibb/nibbPrepImages' ( cd samHit && echo samHit && make ) samHit make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/samHit' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o samHit.o -c samHit.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized samHit.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out samHit chmod a+rx samHit mv samHit /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/samHit make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/samHit' ( cd sanger22gtf && echo sanger22gtf && make ) sanger22gtf make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/sanger22gtf' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o sanger22gtf.o -c sanger22gtf.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sanger22gtf sanger22gtf.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sanger22gtf skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sanger22gtf make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/sanger22gtf' ( cd vegaBuildInfo && echo vegaBuildInfo && make ) vegaBuildInfo make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/vegaBuildInfo' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o vegaBuildInfo.o -c vegaBuildInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/vegaBuildInfo vegaBuildInfo.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/vegaBuildInfo' ( cd yeast/checkSgdSync && echo yeast/checkSgdSync && make ) yeast/checkSgdSync make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/checkSgdSync' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o checkSgdSync.o -c checkSgdSync.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkSgdSync checkSgdSync.o ../../../../../lib/i686/jkhgap.a ../../../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkSgdSync skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkSgdSync make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/checkSgdSync' ( cd yeast/fixHarbisonMotifs && echo yeast/fixHarbisonMotifs && make ) yeast/fixHarbisonMotifs make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/fixHarbisonMotifs' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fixHarbisonMotifs.o -c fixHarbisonMotifs.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fixHarbisonMotifs fixHarbisonMotifs.o ../../../../../lib/i686/jkhgap.a ../../../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fixHarbisonMotifs skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fixHarbisonMotifs make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/fixHarbisonMotifs' ( cd yeast/hgSgdGff3 && echo yeast/hgSgdGff3 && make ) yeast/hgSgdGff3 make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/hgSgdGff3' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgSgdGff3.o -c hgSgdGff3.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSgdGff3 hgSgdGff3.o ../../../../../lib/i686/jkhgap.a ../../../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSgdGff3 skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSgdGff3 make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/hgSgdGff3' ( cd yeast/hgSgdGfp && echo yeast/hgSgdGfp && make ) yeast/hgSgdGfp make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/hgSgdGfp' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgSgdGfp.o -c hgSgdGfp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSgdGfp hgSgdGfp.o ../../../../../lib/i686/jkhgap.a ../../../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSgdGfp skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSgdGfp make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/hgSgdGfp' ( cd yeast/hgSgdPep && echo yeast/hgSgdPep && make ) yeast/hgSgdPep make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/hgSgdPep' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgSgdPep.o -c hgSgdPep.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSgdPep hgSgdPep.o ../../../../../lib/i686/jkhgap.a ../../../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSgdPep skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSgdPep make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/hgSgdPep' ( cd yeast/hgYeastRegCode && echo yeast/hgYeastRegCode && make ) yeast/hgYeastRegCode make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/hgYeastRegCode' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgYeastRegCode.o -c hgYeastRegCode.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgYeastRegCode hgYeastRegCode.o ../../../../../lib/i686/jkhgap.a ../../../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgYeastRegCode skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgYeastRegCode make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/hgYeastRegCode' make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside' ( cd trackDbRaFormat && echo trackDbRaFormat && make ) trackDbRaFormat make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/trackDbRaFormat' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o trackDbRaFormat.o -c trackDbRaFormat.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/trackDbRaFormat trackDbRaFormat.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl #echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/trackDbRaFormat make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/trackDbRaFormat' ( cd trackDbPatch && echo trackDbPatch && make ) trackDbPatch make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/trackDbPatch' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o trackDbPatch.o -c trackDbPatch.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/trackDbPatch trackDbPatch.o ../../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/trackDbPatch' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb' ( cd maskOutFa && echo maskOutFa && make ) maskOutFa make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/maskOutFa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o maskOutFa.o -c maskOutFa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/maskOutFa maskOutFa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/maskOutFa skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/maskOutFa make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/maskOutFa' ( cd mdToNcbiLift && echo mdToNcbiLift && make ) mdToNcbiLift make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mdToNcbiLift' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mdToNcbiLift.o -c mdToNcbiLift.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mdToNcbiLift mdToNcbiLift.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mdToNcbiLift skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mdToNcbiLift make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mdToNcbiLift' ( cd mouseStuff && echo mouseStuff && make ) mouseStuff make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff' ( cd axtAndBed && echo axtAndBed && make ) axtAndBed make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtAndBed' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtAndBed.o -c axtAndBed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtAndBed axtAndBed.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtAndBed skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtAndBed make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtAndBed' ( cd axtBest && echo axtBest && make ) axtBest make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtBest' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtBest.o -c axtBest.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtBest axtBest.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtBest skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtBest make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtBest' ( cd axtCalcMatrix && echo axtCalcMatrix && make ) axtCalcMatrix make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtCalcMatrix' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtCalcMatrix.o -c axtCalcMatrix.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtCalcMatrix axtCalcMatrix.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtCalcMatrix skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtCalcMatrix make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtCalcMatrix' ( cd axtChain && echo axtChain && make ) axtChain make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtChain' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtChain.o -c axtChain.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtChain axtChain.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtChain skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtChain make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtChain' ( cd axtDropOverlap && echo axtDropOverlap && make ) axtDropOverlap make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtDropOverlap' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtDropOverlap.o -c axtDropOverlap.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtDropOverlap axtDropOverlap.o ../../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtDropOverlap' ( cd axtDropSelf && echo axtDropSelf && make ) axtDropSelf make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtDropSelf' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtDropSelf.o -c axtDropSelf.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtDropSelf axtDropSelf.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtDropSelf skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtDropSelf make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtDropSelf' ( cd axtFilter && echo axtFilter && make ) axtFilter make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtFilter' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtFilter.o -c axtFilter.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtFilter axtFilter.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtFilter skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtFilter make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtFilter' ( cd axtIndex && echo axtIndex && make ) axtIndex make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtIndex' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtIndex.o -c axtIndex.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtIndex axtIndex.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtIndex skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtIndex make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtIndex' ( cd axtPretty && echo axtPretty && make ) axtPretty make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtPretty' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtPretty.o -c axtPretty.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtPretty axtPretty.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtPretty skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtPretty make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtPretty' ( cd axtQueryCount && echo axtQueryCount && make ) axtQueryCount make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtQueryCount' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtQueryCount.o -c axtQueryCount.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtQueryCount axtQueryCount.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtQueryCount skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtQueryCount make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtQueryCount' ( cd axtRecipBest && echo axtRecipBest && make ) axtRecipBest make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtRecipBest' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtRecipBest.o -c axtRecipBest.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtRecipBest axtRecipBest.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtRecipBest skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtRecipBest make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtRecipBest' ( cd axtRescore && echo axtRescore && make ) axtRescore make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtRescore' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtRescore.o -c axtRescore.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtRescore axtRescore.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtRescore skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtRescore make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtRescore' ( cd axtSort && echo axtSort && make ) axtSort make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtSort' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtSort.o -c axtSort.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtSort axtSort.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtSort skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtSort make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtSort' ( cd axtSplitByTarget && echo axtSplitByTarget && make ) axtSplitByTarget make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtSplitByTarget' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtSplitByTarget.o -c axtSplitByTarget.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtSplitByTarget axtSplitByTarget.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtSplitByTarget skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtSplitByTarget make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtSplitByTarget' ( cd axtSwap && echo axtSwap && make ) axtSwap make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtSwap' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtSwap.o -c axtSwap.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtSwap axtSwap.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtSwap skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtSwap make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtSwap' ( cd axtToBed && echo axtToBed && make ) axtToBed make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtToBed' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtToBed.o -c axtToBed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToBed axtToBed.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToBed skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToBed make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtToBed' ( cd axtToChain && echo axtToChain && make ) axtToChain make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtToChain' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtToChain.o -c axtToChain.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToChain axtToChain.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToChain skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToChain make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtToChain' ( cd axtToMaf && echo axtToMaf && make ) axtToMaf make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtToMaf' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtToMaf.o -c axtToMaf.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToMaf axtToMaf.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToMaf skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToMaf make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtToMaf' ( cd axtToPsl && echo axtToPsl && make ) axtToPsl make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtToPsl' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtToPsl.o -c axtToPsl.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToPsl axtToPsl.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToPsl skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToPsl make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtToPsl' ( cd bedCoverage && echo bedCoverage && make ) bedCoverage make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/bedCoverage' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bedCoverage.o -c bedCoverage.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedCoverage bedCoverage.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedCoverage skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedCoverage make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/bedCoverage' ( cd calcGap && echo calcGap && make ) calcGap make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/calcGap' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o calcGap.o -c calcGap.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/calcGap calcGap.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/calcGap skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/calcGap make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/calcGap' ( cd chainAntiRepeat && echo chainAntiRepeat && make ) chainAntiRepeat make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainAntiRepeat' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainAntiRepeat.o -c chainAntiRepeat.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainAntiRepeat chainAntiRepeat.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainAntiRepeat skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainAntiRepeat make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainAntiRepeat' ( cd chainDbToFile && echo chainDbToFile && make ) chainDbToFile make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainDbToFile' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainDbToFile.o -c chainDbToFile.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainDbToFile chainDbToFile.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainDbToFile skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainDbToFile make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainDbToFile' ( cd chainFilter && echo chainFilter && make ) chainFilter make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainFilter' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainFilter.o -c chainFilter.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainFilter chainFilter.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainFilter skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainFilter make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainFilter' ( cd chainMergeSort && echo chainMergeSort && make ) chainMergeSort make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainMergeSort' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainMergeSort.o -c chainMergeSort.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainMergeSort chainMergeSort.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainMergeSort skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainMergeSort make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainMergeSort' ( cd chainNet && echo chainNet && make ) chainNet make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainNet' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainNet.o -c chainNet.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainNet chainNet.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainNet' ( cd chainPreNet && echo chainPreNet && make ) chainPreNet make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainPreNet' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainPreNet.o -c chainPreNet.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainPreNet chainPreNet.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainPreNet skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainPreNet make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainPreNet' ( cd chainSort && echo chainSort && make ) chainSort make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainSort' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainSort.o -c chainSort.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainSort chainSort.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainSort skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainSort make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainSort' ( cd chainSplit && echo chainSplit && make ) chainSplit make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainSplit' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainSplit.o -c chainSplit.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainSplit chainSplit.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainSplit skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainSplit make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainSplit' ( cd chainStats && echo chainStats && make ) chainStats make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainStats' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainStats.o -c chainStats.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainStats chainStats.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainStats' ( cd chainStitchId && echo chainStitchId && make ) chainStitchId make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainStitchId' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainStitchId.o -c chainStitchId.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainStitchId chainStitchId.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainStitchId skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainStitchId make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainStitchId' ( cd chainSwap && echo chainSwap && make ) chainSwap make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainSwap' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainSwap.o -c chainSwap.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainSwap chainSwap.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainSwap skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainSwap make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainSwap' ( cd chainToAxt && echo chainToAxt && make ) chainToAxt make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainToAxt' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainToAxt.o -c chainToAxt.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainToAxt chainToAxt.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainToAxt skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainToAxt make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainToAxt' ( cd chainToPsl && echo chainToPsl && make ) chainToPsl make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainToPsl' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainToPsl.o -c chainToPsl.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainToPsl chainToPsl.o ../../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainToPsl' ( cd gcForBed && echo gcForBed && make ) gcForBed make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/gcForBed' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gcForBed.o -c gcForBed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gcForBed gcForBed.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gcForBed skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gcForBed make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/gcForBed' ( cd knownVsBlat && echo knownVsBlat && make ) knownVsBlat make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/knownVsBlat' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o knownVsBlat.o -c knownVsBlat.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o blatStats.o -c blatStats.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/knownVsBlat knownVsBlat.o blatStats.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/knownVsBlat skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/knownVsBlat i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kvsSummary.o -c kvsSummary.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kvsSummary kvsSummary.o blatStats.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kvsSummary skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kvsSummary make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/knownVsBlat' ( cd lavToAxt && echo lavToAxt && make ) lavToAxt make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/lavToAxt' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o lavToAxt.o -c lavToAxt.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/lavToAxt lavToAxt.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/lavToAxt skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/lavToAxt make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/lavToAxt' ( cd lavToPsl && echo lavToPsl && make ) lavToPsl make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/lavToPsl' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o lavToPsl.o -c lavToPsl.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/lavToPsl lavToPsl.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/lavToPsl skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/lavToPsl make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/lavToPsl' ( cd libScan && echo libScan && make ) libScan make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/libScan' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o libScan.o -c libScan.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/libScan libScan.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/libScan' ( cd mafCoverage && echo mafCoverage && make ) mafCoverage make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafCoverage' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafCoverage.o -c mafCoverage.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafCoverage mafCoverage.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafCoverage skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafCoverage make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafCoverage' ( cd mafFetch && echo mafFetch && make ) mafFetch make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafFetch' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafFetch.o -c mafFetch.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafFetch mafFetch.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafFetch skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafFetch make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafFetch' ( cd mafRanges && echo mafRanges && make ) mafRanges make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafRanges' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafRanges.o -c mafRanges.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges mafRanges.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges cd tests && make make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafRanges/tests' rm -rf output mkdir -p output /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf hg17 output/hg17.bed diff expected/hg17.bed output/hg17.bed /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf hg17 -notAllOGap output/hg17.nao.bed diff expected/hg17.nao.bed output/hg17.nao.bed /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf hg17 -otherDb=galGal2 \ output/hg17.galGal2.bed diff expected/hg17.galGal2.bed output/hg17.galGal2.bed /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf hg17 -otherDb=galGal2 -notAllOGap \ output/hg17.galGal2.nao.bed diff expected/hg17.galGal2.nao.bed output/hg17.galGal2.nao.bed /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf hg17 -otherDb=danRer1,fr1 \ output/hg17.danRer1.fr1.bed diff expected/hg17.danRer1.fr1.bed output/hg17.danRer1.fr1.bed /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf galGal2 output/galGal2.bed diff expected/galGal2.bed output/galGal2.bed /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf galGal2 -notAllOGap output/galGal2.nao.bed diff expected/galGal2.nao.bed output/galGal2.nao.bed /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf galGal2 -otherDb=fr1 output/galGal2.fr1.bed diff expected/galGal2.fr1.bed output/galGal2.fr1.bed /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf fr1 output/fr1.bed diff expected/fr1.bed output/fr1.bed /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf canFam1 output/canFam1.bed diff expected/canFam1.bed output/canFam1.bed /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf canFam1 -notAllOGap output/canFam1.nao.bed diff expected/canFam1.nao.bed output/canFam1.nao.bed make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafRanges/tests' make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafRanges' ( cd mafToAxt && echo mafToAxt && make ) mafToAxt make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafToAxt' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafToAxt.o -c mafToAxt.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafToAxt mafToAxt.o ../../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafToAxt' ( cd mafToPsl && echo mafToPsl && make ) mafToPsl make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafToPsl' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafToPsl.o -c mafToPsl.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafToPsl mafToPsl.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafToPsl skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafToPsl make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafToPsl' ( cd mousePoster && echo mousePoster && make ) mousePoster make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mousePoster' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mousePoster.o -c mousePoster.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mousePoster mousePoster.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mousePoster skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mousePoster make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mousePoster' ( cd netChainSubset && echo netChainSubset && make ) netChainSubset make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netChainSubset' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o netChainSubset.o -c netChainSubset.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netChainSubset netChainSubset.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netChainSubset skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netChainSubset make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netChainSubset' ( cd netClass && echo netClass && make ) netClass make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netClass' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o netClass.o -c netClass.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netClass netClass.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netClass skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netClass make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netClass' ( cd netFilter && echo netFilter && make ) netFilter make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netFilter' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o netFilter.o -c netFilter.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netFilter netFilter.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netFilter skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netFilter make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netFilter' ( cd netSplit && echo netSplit && make ) netSplit make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netSplit' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o netSplit.o -c netSplit.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netSplit netSplit.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netSplit skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netSplit make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netSplit' ( cd netStats && echo netStats && make ) netStats make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netStats' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o netStats.o -c netStats.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netStats netStats.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netStats skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netStats make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netStats' ( cd netSyntenic && echo netSyntenic && make ) netSyntenic make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netSyntenic' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o netSyntenic.o -c netSyntenic.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netSyntenic netSyntenic.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netSyntenic skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netSyntenic make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netSyntenic' ( cd netToAxt && echo netToAxt && make ) netToAxt make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netToAxt' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o netToAxt.o -c netToAxt.c i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netToAxt netToAxt.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netToAxt skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netToAxt make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netToAxt' ( cd netToBed && echo netToBed && make ) netToBed make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netToBed' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o netToBed.o -c netToBed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netToBed netToBed.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netToBed skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netToBed make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netToBed' ( cd netToBedWithId && echo netToBedWithId && make ) netToBedWithId make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netToBedWithId' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o netToBedWithId.o -c netToBedWithId.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netToBedWithId netToBedWithId.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netToBedWithId skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netToBedWithId make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netToBedWithId' ( cd orthologBySynteny && echo orthologBySynteny && make ) orthologBySynteny make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/orthologBySynteny' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o orthologBySynteny.o -c orthologBySynteny.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orthologBySynteny orthologBySynteny.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/orthologBySynteny' ( cd phToPsl && echo phToPsl && make ) phToPsl make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/phToPsl' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o phToPsl.o -c phToPsl.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/phToPsl phToPsl.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/phToPsl skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/phToPsl make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/phToPsl' ( cd pslMrnaCover && echo pslMrnaCover && make ) pslMrnaCover make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/pslMrnaCover' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslMrnaCover.o -c pslMrnaCover.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslMrnaCover pslMrnaCover.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslMrnaCover skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslMrnaCover make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/pslMrnaCover' ( cd regionPicker && echo regionPicker && make ) regionPicker make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/regionPicker' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o regionPicker.o -c regionPicker.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/regionPicker regionPicker.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/regionPicker skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/regionPicker make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/regionPicker' ( cd rikenBestInCluster && echo rikenBestInCluster && make ) rikenBestInCluster make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/rikenBestInCluster' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rikenBestInCluster.o -c rikenBestInCluster.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/rikenBestInCluster rikenBestInCluster.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/rikenBestInCluster skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/rikenBestInCluster make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/rikenBestInCluster' ( cd simpleChain && echo simpleChain && make ) simpleChain make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/simpleChain' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o simpleChain.o -c simpleChain.c i686-pc-linux-gnu-gcc -O2 -pipe -o simpleChain simpleChain.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm cp -f simpleChain /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/simpleChain' ( cd splitSim && echo splitSim && make ) splitSim make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/splitSim' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o splitSim.o -c splitSim.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/splitSim splitSim.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/splitSim skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/splitSim make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/splitSim' ( cd subsetAxt && echo subsetAxt && make ) subsetAxt make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/subsetAxt' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o subsetAxt.o -c subsetAxt.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subsetAxt subsetAxt.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subsetAxt skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subsetAxt make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/subsetAxt' ( cd subsetTraces && echo subsetTraces && make ) subsetTraces make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/subsetTraces' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o subsetTraces.o -c subsetTraces.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subsetTraces subsetTraces.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/subsetTraces' ( cd whyConserved && echo whyConserved && make ) whyConserved make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/whyConserved' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o whyConserved.o -c whyConserved.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/whyConserved whyConserved.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/whyConserved skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/whyConserved i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o trackOverlap.o -c trackOverlap.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/trackOverlap trackOverlap.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/trackOverlap skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/trackOverlap make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/whyConserved' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff' ( cd mrnaToGene && echo mrnaToGene && make ) mrnaToGene make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mrnaToGene' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mrnaToGene.o -c mrnaToGene.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mrnaToGene mrnaToGene.o ../../lib/i686/jkhgap.a ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mrnaToGene' ( cd near/hgCeOrfToGene && echo near/hgCeOrfToGene && make ) near/hgCeOrfToGene make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgCeOrfToGene' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgCeOrfToGene.o -c hgCeOrfToGene.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgCeOrfToGene hgCeOrfToGene.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgCeOrfToGene skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgCeOrfToGene make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgCeOrfToGene' ( cd near/hgClusterGenes && echo near/hgClusterGenes && make ) near/hgClusterGenes make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgClusterGenes' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgClusterGenes.o -c hgClusterGenes.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgClusterGenes hgClusterGenes.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgClusterGenes' ( cd near/hgEmblProtLinks && echo near/hgEmblProtLinks && make ) near/hgEmblProtLinks make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgEmblProtLinks' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgEmblProtLinks.o -c hgEmblProtLinks.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgEmblProtLinks hgEmblProtLinks.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgEmblProtLinks skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgEmblProtLinks make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgEmblProtLinks' ( cd near/hgExpDistance && echo near/hgExpDistance && make ) near/hgExpDistance make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgExpDistance' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgExpDistance_fq.o -c hgExpDistance_fq.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgExpDistance hgExpDistance_fq.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl -lpthread echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgExpDistance skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgExpDistance make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgExpDistance' ( cd near/hgGoAssociation && echo near/hgGoAssociation && make ) near/hgGoAssociation make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgGoAssociation' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgGoAssociation.o -c hgGoAssociation.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGoAssociation hgGoAssociation.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGoAssociation skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGoAssociation make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgGoAssociation' ( cd near/hgKnownToSuper && echo near/hgKnownToSuper && make ) near/hgKnownToSuper make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgKnownToSuper' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgKnownToSuper.o -c hgKnownToSuper.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKnownToSuper hgKnownToSuper.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKnownToSuper skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKnownToSuper make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgKnownToSuper' ( cd near/hgMapToGene && echo near/hgMapToGene && make ) near/hgMapToGene make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgMapToGene' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgMapToGene.o -c hgMapToGene.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMapToGene hgMapToGene.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMapToGene skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMapToGene make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgMapToGene' ( cd near/hgMapViaSwissProt && echo near/hgMapViaSwissProt && make ) near/hgMapViaSwissProt make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgMapViaSwissProt' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgMapViaSwissProt.o -c hgMapViaSwissProt.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMapViaSwissProt hgMapViaSwissProt.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMapViaSwissProt skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMapViaSwissProt make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgMapViaSwissProt' ( cd near/hgProtIdToGenePred && echo near/hgProtIdToGenePred && make ) near/hgProtIdToGenePred make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgProtIdToGenePred' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgProtIdToGenePred.o -c hgProtIdToGenePred.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgProtIdToGenePred hgProtIdToGenePred.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgProtIdToGenePred skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgProtIdToGenePred make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgProtIdToGenePred' ( cd near/hgWormLinks && echo near/hgWormLinks && make ) near/hgWormLinks make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgWormLinks' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgWormLinks.o -c hgWormLinks.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgWormLinks hgWormLinks.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgWormLinks skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgWormLinks make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgWormLinks' ( cd near/pepPredToFa && echo near/pepPredToFa && make ) near/pepPredToFa make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/pepPredToFa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pepPredToFa.o -c pepPredToFa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pepPredToFa pepPredToFa.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pepPredToFa skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pepPredToFa make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/pepPredToFa' ( cd near/hgNearTest && echo near/hgNearTest && make ) near/hgNearTest make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgNearTest' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgNearTest.o -c hgNearTest.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgNearTest hgNearTest.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgNearTest' ( cd near/hgNetDist && echo near/hgNetDist && make ) near/hgNetDist make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgNetDist' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgNetDist.o -c hgNetDist.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgNetDist hgNetDist.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgNetDist skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgNetDist i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgLoadNetDist.o -c hgLoadNetDist.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadNetDist hgLoadNetDist.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadNetDist skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadNetDist i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hprdP2p.o -c hprdP2p.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hprdP2p hprdP2p.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hprdP2p skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hprdP2p make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgNetDist' ( cd near/knownToHprd && echo near/knownToHprd && make ) near/knownToHprd make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/knownToHprd' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o knownToHprd.o -c knownToHprd.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/knownToHprd knownToHprd.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/knownToHprd skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/knownToHprd make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/knownToHprd' ( cd nci60 && echo nci60 && make ) nci60 make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/nci60' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit -I../inc -I../../inc -o findStanAlignments findStanAlignments.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl cp findStanAlignments /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit -I../inc -I../../inc -o stanToBedAndExpRecs stanToBedAndExpRecs.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl cp stanToBedAndExpRecs /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/nci60' ( cd orthoMap && echo orthoMap && make ) orthoMap make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/orthoMap' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o orthoEval.o -c orthoEval.c i686-pc-linux-gnu-gcc -O2 -pipe -I../inc -I../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mgcFastaForBed mgcFastaForBed.c orthoEval.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -I../inc -I../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agxToIntronBeds agxToIntronBeds.c orthoEval.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -I../inc -I../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToFrames bedToFrames.c orthoEval.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -I../inc -I../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orthoMap orthoMap.c orthoEval.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -I../inc -I../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orthoEvaluate orthoEvaluate.c orthoEval.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -I../inc -I../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orthoPickIntron orthoPickIntron.c orthoEval.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lm -lz orthoPickIntron.c: In function ‘writeOutFrames’: orthoPickIntron.c:409:2: warning: unknown conversion type character ‘,’ in format orthoPickIntron.c:409:2: warning: unknown conversion type character ‘"’ in format rm orthoEval.o make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/orthoMap' ( cd overlapSelect && echo overlapSelect && make ) overlapSelect make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/overlapSelect' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rowReader.o -c rowReader.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chromAnn.o -c chromAnn.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chromAnnMap.o -c chromAnnMap.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o selectTable.o -c selectTable.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o coordCols.o -c coordCols.c echo '/* GENERATED CODE, DO NOT EDIT */' > usage.msg.tmp /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify usage.txt >> usage.msg.tmp mv -f usage.msg.tmp usage.msg i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o overlapSelect.o -c overlapSelect.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o overlapSelect rowReader.o chromAnn.o chromAnnMap.o selectTable.o coordCols.o overlapSelect.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm cp -f overlapSelect /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/overlapSelect make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/overlapSelect' ( cd patCount && echo patCount && make ) patCount make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/patCount' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o patCount.o -c patCount.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/patCount patCount.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/patCount' ( cd perf && echo perf && make ) perf make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/perf' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgTracksRandom.o -c hgTracksRandom.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgTracksRandom hgTracksRandom.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/perf' ( cd protein && echo protein && make ) protein make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein' (cd blastRecipBest && echo blastRecipBest && make) blastRecipBest make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/blastRecipBest' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o blastRecipBest.o -c blastRecipBest.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blastRecipBest blastRecipBest.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blastRecipBest skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blastRecipBest make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/blastRecipBest' (cd gadPos && echo gadPos && make) gadPos make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/gadPos' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gadPos.o -c gadPos.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized gadPos.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out gadPos chmod a+rx gadPos mv gadPos /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gadPos make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/gadPos' (cd hmmPfamToTab && echo hmmPfamToTab && make) hmmPfamToTab make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/hmmPfamToTab' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hmmPfamToTab.o -c hmmPfamToTab.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hmmPfamToTab hmmPfamToTab.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hmmPfamToTab skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hmmPfamToTab make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/hmmPfamToTab' (cd kgAliasM && echo kgAliasM && make) kgAliasM make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgAliasM' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kgAliasM.o -c kgAliasM.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgAliasM.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out kgAliasM chmod a+rx kgAliasM mv kgAliasM /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgAliasM' (cd kgAliasP && echo kgAliasP && make) kgAliasP make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgAliasP' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kgAliasP.o -c kgAliasP.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgAliasP.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out kgAliasP echo 'skipping strip' kgAliasP skipping strip kgAliasP chmod a+rx kgAliasP mv kgAliasP /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgAliasP' (cd kgAliasKgXref && echo kgAliasKgXref && make) kgAliasKgXref make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgAliasKgXref' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kgAliasKgXref.o -c kgAliasKgXref.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgAliasKgXref.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out kgAliasKgXref echo 'skipping strip' kgAliasKgXref skipping strip kgAliasKgXref chmod a+rx kgAliasKgXref mv kgAliasKgXref /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgAliasKgXref' (cd kgAliasRefseq && echo kgAliasRefseq && make) kgAliasRefseq make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgAliasRefseq' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kgAliasRefseq.o -c kgAliasRefseq.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgAliasRefseq.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out kgAliasRefseq echo 'skipping strip' kgAliasRefseq skipping strip kgAliasRefseq chmod a+rx kgAliasRefseq mv kgAliasRefseq /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgAliasRefseq' (cd kgProtAlias && echo kgProtAlias && make) kgProtAlias make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgProtAlias' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kgProtAlias.o -c kgProtAlias.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgProtAlias.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out kgProtAlias echo 'skipping strip' kgProtAlias skipping strip kgProtAlias chmod a+rx kgProtAlias mv kgProtAlias /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgProtAlias' (cd kgProtAliasNCBI && echo kgProtAliasNCBI && make) kgProtAliasNCBI make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgProtAliasNCBI' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kgProtAliasNCBI.o -c kgProtAliasNCBI.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgProtAliasNCBI.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out kgProtAliasNCBI echo 'skipping strip' kgProtAliasNCBI skipping strip kgProtAliasNCBI chmod a+rx kgProtAliasNCBI mv kgProtAliasNCBI /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgProtAliasNCBI' (cd kgBestMrna2 && echo kgBestMrna2 && make) kgBestMrna2 make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestMrna2' make kgPrepBestMrna2 make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestMrna2' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kgPrepBestMrna2.o -c kgPrepBestMrna2.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 \ -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPrepBestMrna2 kgPrepBestMrna2.o ../../../lib/i686/jkOwnLib.a ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPrepBestMrna2 skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPrepBestMrna2 make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestMrna2' make kgResultBestMrna2 make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestMrna2' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kgResultBestMrna2.o -c kgResultBestMrna2.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 \ -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgResultBestMrna2 kgResultBestMrna2.o ../../../lib/i686/jkOwnLib.a ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgResultBestMrna2 skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgResultBestMrna2 make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestMrna2' make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestMrna2' (cd kgBestRef2 && echo kgBestRef2 && make) kgBestRef2 make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestRef2' make kgPrepBestRef2 make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestRef2' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kgPrepBestRef2.o -c kgPrepBestRef2.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 \ -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPrepBestRef2 kgPrepBestRef2.o ../../../lib/i686/jkOwnLib.a ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPrepBestRef2 skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPrepBestRef2 make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestRef2' make kgResultBestRef2 make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestRef2' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kgResultBestRef2.o -c kgResultBestRef2.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 \ -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgResultBestRef2 kgResultBestRef2.o ../../../lib/i686/jkOwnLib.a ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgResultBestRef2 skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgResultBestRef2 make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestRef2' make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestRef2' (cd kgCheck && echo kgCheck && make) kgCheck make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgCheck' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kgCheck.o -c kgCheck.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgCheck.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out kgCheck chmod a+rx kgCheck mv kgCheck /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgCheck make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgCheck' (cd kgGetCds && echo kgGetCds && make) kgGetCds make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgGetCds' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kgGetCds.o -c kgGetCds.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgGetCds.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out kgGetCds chmod a+rx kgGetCds mv kgGetCds /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgGetCds make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgGetCds' (cd kgGetPep && echo kgGetPep && make) kgGetPep make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgGetPep' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kgGetPep.o -c kgGetPep.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 \ -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgGetPep kgGetPep.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgGetPep skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgGetPep make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgGetPep' (cd kgPepMrna && echo kgPepMrna && make) kgPepMrna make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgPepMrna' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kgPepMrna.o -c kgPepMrna.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPepMrna kgPepMrna.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPepMrna skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPepMrna make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgPepMrna' (cd kgPick && echo kgPick && make) kgPick make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgPick' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kgPick.o -c kgPick.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgPick.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out kgPick chmod a+rx kgPick mv kgPick /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPick make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgPick' (cd kgPutBack && echo kgPutBack && make) kgPutBack make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgPutBack' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kgPutBack.o -c kgPutBack.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPutBack kgPutBack.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPutBack skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPutBack make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgPutBack' (cd kgXref && echo kgXref && make) kgXref make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgXref' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kgXref.o -c kgXref.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgXref.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out kgXref echo 'skipping strip' kgXref skipping strip kgXref chmod a+rx kgXref mv kgXref /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgXref' (cd kgXref2 && echo kgXref2 && make) kgXref2 make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgXref2' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kgXref2.o -c kgXref2.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgXref2.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out kgXref2 echo 'skipping strip' kgXref2 skipping strip kgXref2 chmod a+rx kgXref2 mv kgXref2 /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgXref2' (cd pbCalDist && echo pbCalDist && make) pbCalDist make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbCalDist' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pbCalDist.o -c pbCalDist.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized pbCalDist.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out pbCalDist chmod a+rx pbCalDist mv pbCalDist /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pbCalDist make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbCalDist' (cd pbCalDistGlobal && echo pbCalDistGlobal && make) pbCalDistGlobal make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbCalDistGlobal' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pbCalDistGlobal.o -c pbCalDistGlobal.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized pbCalDistGlobal.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out pbCalDistGlobal chmod a+rx pbCalDistGlobal mv pbCalDistGlobal /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pbCalDistGlobal make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbCalDistGlobal' (cd pbCalPi && echo pbCalPi && make) pbCalPi make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbCalPi' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pbCalPi.o -c pbCalPi.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized pbCalPi.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out pbCalPi chmod a+rx pbCalPi mv pbCalPi /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pbCalPi make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbCalPi' (cd pbCalResStd && echo pbCalResStd && make) pbCalResStd make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbCalResStd' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pbCalResStd.o -c pbCalResStd.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized pbCalResStd.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out pbCalResStd chmod a+rx pbCalResStd mv pbCalResStd /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pbCalResStd make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbCalResStd' (cd pbCalResStdGlobal && echo pbCalResStdGlobal && make) pbCalResStdGlobal make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbCalResStdGlobal' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pbCalResStdGlobal.o -c pbCalResStdGlobal.c pbCalResStdGlobal.c: In function ‘main’: pbCalResStdGlobal.c:233:11: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result pbCalResStdGlobal.c:237:11: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result pbCalResStdGlobal.c:240:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result pbCalResStdGlobal.c:247:11: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result pbCalResStdGlobal.c:258:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result pbCalResStdGlobal.c:262:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result pbCalResStdGlobal.c:268:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result pbCalResStdGlobal.c:272:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized pbCalResStdGlobal.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out pbCalResStdGlobal chmod a+rx pbCalResStdGlobal mv pbCalResStdGlobal /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pbCalResStdGlobal make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbCalResStdGlobal' (cd pbHgnc && echo pbHgnc && make) pbHgnc make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbHgnc' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pbHgnc.o -c pbHgnc.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized pbHgnc.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out pbHgnc chmod a+rx pbHgnc mv pbHgnc /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pbHgnc make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbHgnc' (cd pfamXref && echo pfamXref && make) pfamXref make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pfamXref' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pfamXref.o -c pfamXref.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pfamXref pfamXref.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pfamXref skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pfamXref make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pfamXref' (cd rmKGPepMrna && echo rmKGPepMrna && make) rmKGPepMrna make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/rmKGPepMrna' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rmKGPepMrna.o -c rmKGPepMrna.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized rmKGPepMrna.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out rmKGPepMrna chmod a+rx rmKGPepMrna mv rmKGPepMrna /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/rmKGPepMrna' (cd scopCollapse && echo scopCollapse && make) scopCollapse make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/scopCollapse' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o scopCollapse.o -c scopCollapse.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/scopCollapse scopCollapse.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/scopCollapse skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/scopCollapse make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/scopCollapse' (cd spOrganism && echo spOrganism && make) spOrganism make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spOrganism' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spOrganism.o -c spOrganism.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized spOrganism.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out spOrganism chmod a+rx spOrganism mv spOrganism /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spOrganism make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spOrganism' (cd spTest && echo spTest && make) spTest make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spTest' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spTest.o -c spTest.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spTest spTest.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spTest skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spTest make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spTest' (cd spToDb && echo spToDb && make) spToDb make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spToDb' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spToDb.o -c spToDb.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spToDb spToDb.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spToDb' (cd spLoadPsiBlast && echo spLoadPsiBlast && make) spLoadPsiBlast make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spLoadPsiBlast' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spLoadPsiBlast.o -c spLoadPsiBlast.c i686-pc-linux-gnu-gcc -O2 -pipe -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spLoadPsiBlast spLoadPsiBlast.o ../../../lib/i686/jkpbap.a ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spLoadPsiBlast' (cd spLoadRankProp && echo spLoadRankProp && make) spLoadRankProp make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spLoadRankProp' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spLoadRankProp.o -c spLoadRankProp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rankPropProt.o -c rankPropProt.c i686-pc-linux-gnu-gcc -O2 -pipe -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spLoadRankProp spLoadRankProp.o rankPropProt.o ../../../lib/i686/jkpbap.a ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spLoadRankProp' (cd spToProteinsVar && echo spToProteinsVar && make) spToProteinsVar make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spToProteinsVar' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spToProteinsVar.o -c spToProteinsVar.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized spToProteinsVar.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out spToProteinsVar chmod a+rx spToProteinsVar mv spToProteinsVar /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spToProteinsVar make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spToProteinsVar' (cd spToSpXref2 && echo spToSpXref2 && make) spToSpXref2 make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spToSpXref2' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spToSpXref2.o -c spToSpXref2.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized spToSpXref2.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out spToSpXref2 chmod a+rx spToSpXref2 mv spToSpXref2 /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spToSpXref2 make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spToSpXref2' (cd spXref3 && echo spXref3 && make) spXref3 make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spXref3' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spXref3.o -c spXref3.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized spXref3.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out spXref3 chmod a+rx spXref3 mv spXref3 /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spXref3 make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spXref3' (cd spm3 && echo spm3 && make) spm3 make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spm3' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spm3.o -c spm3.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized spm3.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out spm3 chmod a+rx spm3 mv spm3 /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spm3 make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spm3' (cd spm6 && echo spm6 && make) spm6 make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spm6' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spm6.o -c spm6.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized spm6.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out spm6 chmod a+rx spm6 mv spm6 /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spm6 make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spm6' (cd spm7 && echo spm7 && make) spm7 make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spm7' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spm7.o -c spm7.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized spm7.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out spm7 chmod a+rx spm7 mv spm7 /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spm7 make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spm7' (cd spToProteins && echo spToProteins && make) spToProteins make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spToProteins' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spToProteins.o -c spToProteins.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized spToProteins.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out spToProteins chmod a+rx spToProteins mv spToProteins /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spToProteins make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spToProteins' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein' ( cd pslCDnaFilter && echo pslCDnaFilter && make ) pslCDnaFilter make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslCDnaFilter' echo '/* GENERATED CODE, DO NOT EDIT */' > usage.msg.tmp /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify usage.txt >> usage.msg.tmp mv -f usage.msg.tmp usage.msg echo '/* GENERATED CODE, DO NOT EDIT */' > algo.msg.tmp /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify algo.txt >> algo.msg.tmp mv -f algo.msg.tmp algo.msg i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o cDnaAligns.o -c cDnaAligns.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o cDnaStats.o -c cDnaStats.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o cDnaReader.o -c cDnaReader.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o overlapFilter.o -c overlapFilter.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o polyASize.o -c polyASize.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hapRegions.o -c hapRegions.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslCDnaFilter.o -c pslCDnaFilter.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o pslCDnaFilter cDnaAligns.o cDnaStats.o cDnaReader.o overlapFilter.o polyASize.o hapRegions.o pslCDnaFilter.o ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm cp -f pslCDnaFilter /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslCDnaFilter make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslCDnaFilter' ( cd pslCat && echo pslCat && make ) pslCat make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslCat' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslCat.o -c pslCat.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslCat pslCat.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslCat' ( cd pslCheck && echo pslCheck && make ) pslCheck make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslCheck' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslCheck.o -c pslCheck.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslCheck pslCheck.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslCheck' ( cd pslCoverage && echo pslCoverage && make ) pslCoverage make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslCoverage' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslCoverage.o -c pslCoverage.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslCoverage pslCoverage.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslCoverage' ( cd pslDiff && echo pslDiff && make ) pslDiff make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslDiff' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslSets.o -c pslSets.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslDiff.o -c pslDiff.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o pslDiff pslSets.o pslDiff.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm cp -f pslDiff /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslDiff make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslDiff' ( cd pslDropOverlap && echo pslDropOverlap && make ) pslDropOverlap make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslDropOverlap' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslDropOverlap.o -c pslDropOverlap.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslDropOverlap pslDropOverlap.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslDropOverlap' ( cd pslFilter && echo pslFilter && make ) pslFilter make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslFilter' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslFilter.o -c pslFilter.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslFilter pslFilter.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslFilter' ( cd pslFilterPrimers && echo pslFilterPrimers && make ) pslFilterPrimers make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslFilterPrimers' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslFilterPrimers.o -c pslFilterPrimers.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized pslFilterPrimers.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm mv a.out pslFilterPrimers chmod a+rx pslFilterPrimers cp -f pslFilterPrimers /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslFilterPrimers echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslFilterPrimers skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslFilterPrimers make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslFilterPrimers' ( cd pslGlue && echo pslGlue && make ) pslGlue make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslGlue' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslGlue.o -c pslGlue.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslGlue pslGlue.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslGlue' ( cd pslHisto && echo pslHisto && make ) pslHisto make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslHisto' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslHisto.o -c pslHisto.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslHisto pslHisto.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslHisto' ( cd pslHitPercent && echo pslHitPercent && make ) pslHitPercent make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslHitPercent' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslHitPercent.o -c pslHitPercent.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslHitPercent pslHitPercent.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslHitPercent' ( cd pslIntronsOnly && echo pslIntronsOnly && make ) pslIntronsOnly make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslIntronsOnly' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslIntronsOnly.o -c pslIntronsOnly.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslIntronsOnly pslIntronsOnly.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslIntronsOnly' ( cd pslMap && echo pslMap && make ) pslMap make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslMap' echo '/* GENERATED CODE, DO NOT EDIT */' > usage.msg.tmp /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify usage.txt >> usage.msg.tmp mv -f usage.msg.tmp usage.msg i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslMap.o -c pslMap.c i686-pc-linux-gnu-gcc -O2 -pipe -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -g -o pslMap pslMap.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm mkdir -p /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin cp -f pslMap /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslMap skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslMap make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslMap' ( cd pslPartition && echo pslPartition && make ) pslPartition make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslPartition' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslPartition.o -c pslPartition.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o pslPartition pslPartition.o ../../lib/i686/jkweb.a -lm cp -f pslPartition /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslPartition make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslPartition' ( cd pslPairs && echo pslPairs && make ) pslPairs make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslPairs' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslPairs.o -c pslPairs.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized pslPairs.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm mv a.out pslPairs echo 'skipping strip' pslPairs skipping strip pslPairs chmod a+rx pslPairs cp pslPairs /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslPairs' ( cd pslPretty && echo pslPretty && make ) pslPretty make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslPretty' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslPretty pslPretty.o ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslPretty' ( cd pslQuickFilter && echo pslQuickFilter && make ) pslQuickFilter make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslQuickFilter' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslQuickFilter.o -c pslQuickFilter.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized pslQuickFilter.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm mv a.out pslQuickFilter echo 'skipping strip' pslQuickFilter skipping strip pslQuickFilter chmod a+rx pslQuickFilter cp pslQuickFilter /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslQuickFilter' ( cd pslRecalcMatch && echo pslRecalcMatch && make ) pslRecalcMatch make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslRecalcMatch' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslRecalcMatch.o -c pslRecalcMatch.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslRecalcMatch pslRecalcMatch.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslRecalcMatch skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslRecalcMatch make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslRecalcMatch' ( cd pslReps && echo pslReps && make ) pslReps make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslReps' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslReps pslReps.o ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslReps' ( cd pslSelect && echo pslSelect && make ) pslSelect make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSelect' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslSelect.o -c pslSelect.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSelect pslSelect.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSelect' ( cd pslSimp && echo pslSimp && make ) pslSimp make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSimp' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslSimp.o -c pslSimp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSimp pslSimp.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSimp' ( cd pslSort && echo pslSort && make ) pslSort make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSort' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSort pslSort.o ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSort' ( cd pslSortAcc && echo pslSortAcc && make ) pslSortAcc make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSortAcc' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslSortAcc.o -c pslSortAcc.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSortAcc pslSortAcc.o ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSortAcc' ( cd pslSplitOnTarget && echo pslSplitOnTarget && make ) pslSplitOnTarget make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSplitOnTarget' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslSplitOnTarget.o -c pslSplitOnTarget.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSplitOnTarget pslSplitOnTarget.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSplitOnTarget skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSplitOnTarget make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSplitOnTarget' ( cd pslStats && echo pslStats && make ) pslStats make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslStats' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslStats.o -c pslStats.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslStats pslStats.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslStats' ( cd pslSwap && echo pslSwap && make ) pslSwap make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSwap' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslSwap.o -c pslSwap.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o pslSwap pslSwap.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm cp -f pslSwap /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSwap echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSwap skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSwap make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSwap' ( cd pslToBed && echo pslToBed && make ) pslToBed make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslToBed' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit -I../inc -I../../inc -o pslToBed pslToBed.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm mv pslToBed /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslToBed' ( cd pslUnpile && echo pslUnpile && make ) pslUnpile make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslUnpile' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslUnpile.o -c pslUnpile.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslUnpile pslUnpile.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslUnpile' ( cd pslxToFa && echo pslxToFa && make ) pslxToFa make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslxToFa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslxToFa.o -c pslxToFa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslxToFa pslxToFa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslxToFa' ( cd qa && echo qa && make ) qa make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/qa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/apacheMonitor apacheMonitor.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkCardinality checkCardinality.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/countNib countNib.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dumpNib dumpNib.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gbSeqCheck gbSeqCheck.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/reviewIndexes reviewIndexes.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/seqCheck seqCheck.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/getChroms getChroms.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkChain checkChain.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/testSearch testSearch.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/timePosTable timePosTable.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/qa' ( cd qaToQac && echo qaToQac && make ) qaToQac make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/qaToQac' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o qaToQac.o -c qaToQac.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/qaToQac qaToQac.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/qaToQac' ( cd qacAgpLift && echo qacAgpLift && make ) qacAgpLift make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/qacAgpLift' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o qacAgpLift.o -c qacAgpLift.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/qacAgpLift qacAgpLift.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/qacAgpLift skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/qacAgpLift make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/qacAgpLift' ( cd qacToQa && echo qacToQa && make ) qacToQa make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/qacToQa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o qacToQa.o -c qacToQa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/qacToQa qacToQa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/qacToQa' ( cd qacToWig && echo qacToWig && make ) qacToWig make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/qacToWig' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o qacToWig.o -c qacToWig.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/qacToWig qacToWig.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/qacToWig' ( cd ratStuff && echo ratStuff && make ) ratStuff make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff' mafAddIRows make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafAddIRows' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -ggdb -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafAddIRows.o -c mafAddIRows.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -ggdb -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafAddIRows mafAddIRows.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafAddIRows' mafAddQRows make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafAddQRows' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafAddQRows.o -c mafAddQRows.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafAddQRows mafAddQRows.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafAddQRows skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafAddQRows make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafAddQRows' mafFilter make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafFilter' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafFilter.o -c mafFilter.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafFilter mafFilter.o ../../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafFilter' mafFrag make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafFrag' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafFrag.o -c mafFrag.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafFrag mafFrag.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafFrag skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafFrag make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafFrag' mafFrags make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafFrags' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafFrags.o -c mafFrags.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafFrags mafFrags.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafFrags skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafFrags make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafFrags' mafGene make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafGene' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -ggdb -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafGene.o -c mafGene.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafGene mafGene.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafGene' mafMeFirst make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafMeFirst' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafMeFirst.o -c mafMeFirst.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafMeFirst mafMeFirst.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafMeFirst skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafMeFirst make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafMeFirst' mafSpeciesList make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafSpeciesList' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafSpeciesList.o -c mafSpeciesList.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSpeciesList mafSpeciesList.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSpeciesList skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSpeciesList make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafSpeciesList' mafSpeciesSubset make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafSpeciesSubset' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafSpeciesSubset.o -c mafSpeciesSubset.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSpeciesSubset mafSpeciesSubset.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSpeciesSubset skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSpeciesSubset make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafSpeciesSubset' mafSplit make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafSplit' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafSplit.o -c mafSplit.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSplit mafSplit.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSplit skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSplit make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafSplit' mafSplitPos make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafSplitPos' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafSplitPos.o -c mafSplitPos.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSplitPos mafSplitPos.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSplitPos skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSplitPos make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafSplitPos' mafsInRegion make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafsInRegion' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafsInRegion.o -c mafsInRegion.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafsInRegion mafsInRegion.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafsInRegion skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafsInRegion make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafsInRegion' mafOrder make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafOrder' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -ggdb -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafOrder.o -c mafOrder.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -ggdb -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafOrder mafOrder.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafOrder' stageMultiz make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/stageMultiz' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o stageMultiz.o -c stageMultiz.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stageMultiz stageMultiz.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/stageMultiz' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff' ( cd relPairs && echo relPairs && make ) relPairs make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/relPairs' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o relPairs.o -c relPairs.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/relPairs relPairs.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/relPairs' ( cd recycleDb && echo recycleDb && make ) recycleDb make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/recycleDb' cd bedUp && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/recycleDb/bedUp' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bedUp.o -c bedUp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedUp bedUp.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/recycleDb/bedUp' cd bedDown && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/recycleDb/bedDown' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bedDown.o -c bedDown.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedDown bedDown.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/recycleDb/bedDown' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/recycleDb' ( cd reviewSanity && echo reviewSanity && make ) reviewSanity make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/reviewSanity' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o reviewSanity.o -c reviewSanity.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/reviewSanity reviewSanity.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/reviewSanity' ( cd rnaStructure && echo rnaStructure && make ) rnaStructure make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/rnaStructure' hgLoadRnaFold make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/rnaStructure/hgLoadRnaFold' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgLoadRnaFold.o -c hgLoadRnaFold.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadRnaFold hgLoadRnaFold.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadRnaFold skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadRnaFold make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/rnaStructure/hgLoadRnaFold' rnaFoldBig make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/rnaStructure/rnaFoldBig' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rnaFoldBig.o -c rnaFoldBig.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/rnaFoldBig rnaFoldBig.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/rnaFoldBig skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/rnaFoldBig make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/rnaStructure/rnaFoldBig' utrFa make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/rnaStructure/utrFa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o utrFa.o -c utrFa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/utrFa utrFa.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/utrFa skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/utrFa make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/rnaStructure/utrFa' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/rnaStructure' ( cd sage && echo sage && make ) sage make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/sage' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit -I../inc -I../../inc -o addAveMedScoreToPsls addAveMedScoreToPsls.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl cp addAveMedScoreToPsls /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit -I../inc -I../../inc -o createSageSummary createSageSummary.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl cp createSageSummary /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/sage' ( cd scanRa && echo scanRa && make ) scanRa make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/scanRa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o scanRa.o -c scanRa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/scanRa scanRa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/scanRa' ( cd semiNorm && echo semiNorm && make ) semiNorm make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/semiNorm' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o semiNorm.o -c semiNorm.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/semiNorm semiNorm.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/semiNorm skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/semiNorm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/semiNorm' ( cd sim4big && echo sim4big && make ) sim4big make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/sim4big' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o sim4big.o -c sim4big.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sim4big sim4big.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sim4big skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sim4big make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/sim4big' ( cd snpException && echo snpException && make ) snpException make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/snpException' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o snpException.o -c snpException.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc snpException.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpException make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/snpException' ( cd snp && echo snp && make ) snp make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/snp' snpLoad make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/snp/snpLoad' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o snpNcbiToUcsc.o -c snpNcbiToUcsc.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpNcbiToUcsc snpNcbiToUcsc.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpNcbiToUcsc skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpNcbiToUcsc i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hapmapPhaseIIISummary.o -c hapmapPhaseIIISummary.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hapmapPhaseIIISummary hapmapPhaseIIISummary.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hapmapPhaseIIISummary skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hapmapPhaseIIISummary make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/snp/snpLoad' snpMask make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/snp/snpMask' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o snpMaskSingle.o -c snpMaskSingle.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpMaskSingle snpMaskSingle.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpMaskSingle skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpMaskSingle i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o snpMaskAddInsertions.o -c snpMaskAddInsertions.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpMaskAddInsertions snpMaskAddInsertions.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpMaskAddInsertions skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpMaskAddInsertions i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o snpMaskCutDeletions.o -c snpMaskCutDeletions.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpMaskCutDeletions snpMaskCutDeletions.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpMaskCutDeletions skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpMaskCutDeletions make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/snp/snpMask' snpValid make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/snp/snpValid' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o snpValid.o -c snpValid.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o snpValid snpValid.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' snpValid skipping strip snpValid cp snpValid /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpValid make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/snp/snpValid' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/snp' ( cd spideyToPsl && echo spideyToPsl && make ) spideyToPsl make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/spideyToPsl' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spideyToPsl.o -c spideyToPsl.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o spideyToPsl spideyToPsl.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm mkdir -p /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin cp -f spideyToPsl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spideyToPsl skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spideyToPsl make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/spideyToPsl' ( cd splitFa && echo splitFa && make ) splitFa make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/splitFa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o splitFa.o -c splitFa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/splitFa splitFa.o ../../lib/i686/jkweb.a make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/splitFa' ( cd splitFaIntoContigs && echo splitFaIntoContigs && make ) splitFaIntoContigs make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/splitFaIntoContigs' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o splitFaIntoContigs.o -c splitFaIntoContigs.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/splitFaIntoContigs splitFaIntoContigs.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/splitFaIntoContigs' ( cd sqlToXml && echo sqlToXml && make ) sqlToXml make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/sqlToXml' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o sqlToXml.o -c sqlToXml.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sqlToXml sqlToXml.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sqlToXml skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sqlToXml make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/sqlToXml' ( cd test && echo test && make ) test make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/test' cd ../../lib && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib' ar rcus i686/jkweb.a aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o gifcomp.o gifdecomp.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o mgCircle.o mgHugeFont.o mgLargeFont.o mgMediumFont.o mgPolygon.o mgSmallFont.o mgTinyFont.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rbTree.o rangeTree.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vGfx.o vGif.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o test.o -c test.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o test test.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/test' ( cd trfBig && echo trfBig && make ) trfBig make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/trfBig' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o trfBig.o -c trfBig.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/trfBig trfBig.o ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/trfBig' ( cd txCds && echo txCds && make ) txCds make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds' txCdsBadBed make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsBadBed' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txCdsBadBed.o -c txCdsBadBed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsBadBed txCdsBadBed.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsBadBed skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsBadBed make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsBadBed' txCdsCluster make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsCluster' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txCdsCluster.o -c txCdsCluster.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsCluster txCdsCluster.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsCluster skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsCluster make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsCluster' txCdsEvFromBed make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsEvFromBed' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txCdsEvFromBed.o -c txCdsEvFromBed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromBed txCdsEvFromBed.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromBed skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromBed make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsEvFromBed' txCdsEvFromBorf make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsEvFromBorf' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txCdsEvFromBorf.o -c txCdsEvFromBorf.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromBorf txCdsEvFromBorf.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromBorf skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromBorf make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsEvFromBorf' txCdsEvFromProtein make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsEvFromProtein' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txCdsEvFromProtein.o -c txCdsEvFromProtein.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromProtein txCdsEvFromProtein.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromProtein skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromProtein make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsEvFromProtein' txCdsEvFromRna make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsEvFromRna' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txCdsEvFromRna.o -c txCdsEvFromRna.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromRna txCdsEvFromRna.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromRna skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromRna make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsEvFromRna' txCdsGoodBed make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsGoodBed' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txCdsGoodBed.o -c txCdsGoodBed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsGoodBed txCdsGoodBed.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsGoodBed skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsGoodBed make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsGoodBed' txCdsOrfInfo make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsOrfInfo' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txCdsOrfInfo.o -c txCdsOrfInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsOrfInfo txCdsOrfInfo.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsOrfInfo skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsOrfInfo make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsOrfInfo' txCdsOrtho make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsOrtho' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txCdsOrtho.o -c txCdsOrtho.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsOrtho txCdsOrtho.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsOrtho skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsOrtho make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsOrtho' txCdsPick make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsPick' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txCdsPick.o -c txCdsPick.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsPick txCdsPick.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsPick skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsPick make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsPick' txCdsPredict make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsPredict' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txCdsPredict.o -c txCdsPredict.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsPredict txCdsPredict.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsPredict skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsPredict make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsPredict' txCdsRaExceptions make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsRaExceptions' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txCdsRaExceptions.o -c txCdsRaExceptions.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsRaExceptions txCdsRaExceptions.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsRaExceptions skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsRaExceptions make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsRaExceptions' txCdsRefBestEvOnly make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsRefBestEvOnly' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txCdsRefBestEvOnly.o -c txCdsRefBestEvOnly.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsRefBestEvOnly txCdsRefBestEvOnly.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsRefBestEvOnly skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsRefBestEvOnly make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsRefBestEvOnly' txCdsRepick make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsRepick' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txCdsRepick.o -c txCdsRepick.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsRepick txCdsRepick.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsRepick skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsRepick make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsRepick' txCdsSuspect make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsSuspect' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txCdsSuspect.o -c txCdsSuspect.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsSuspect txCdsSuspect.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsSuspect skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsSuspect make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsSuspect' txCdsSvmInput make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsSvmInput' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txCdsSvmInput.o -c txCdsSvmInput.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsSvmInput txCdsSvmInput.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsSvmInput skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsSvmInput make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsSvmInput' txCdsToGene make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsToGene' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txCdsToGene.o -c txCdsToGene.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsToGene txCdsToGene.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsToGene skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsToGene make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsToGene' txCdsWeed make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsWeed' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txCdsWeed.o -c txCdsWeed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsWeed txCdsWeed.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsWeed skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsWeed make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsWeed' txInfoAssemble make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txInfoAssemble' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txInfoAssemble.o -c txInfoAssemble.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txInfoAssemble txInfoAssemble.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txInfoAssemble skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txInfoAssemble make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txInfoAssemble' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds' ( cd txGene && echo txGene && make ) txGene make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene' txGenbankData make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGenbankData' cp -p txGenbankData /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts/txGenbankData.tmp mv -f /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts/txGenbankData.tmp /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts/txGenbankData make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGenbankData' txGeneAccession make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneAccession' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txGeneAccession.o -c txGeneAccession.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneAccession txGeneAccession.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneAccession skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneAccession make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneAccession' txGeneAlias make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneAlias' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txGeneAlias.o -c txGeneAlias.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneAlias txGeneAlias.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneAlias skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneAlias make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneAlias' txGeneAltProt make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneAltProt' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txGeneAltProt.o -c txGeneAltProt.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneAltProt txGeneAltProt.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneAltProt skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneAltProt make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneAltProt' txGeneCanonical make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneCanonical' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txGeneCanonical.o -c txGeneCanonical.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneCanonical txGeneCanonical.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneCanonical skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneCanonical make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneCanonical' txGeneCdsMap make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneCdsMap' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txGeneCdsMap.o -c txGeneCdsMap.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneCdsMap txGeneCdsMap.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneCdsMap skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneCdsMap make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneCdsMap' txGeneColor make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneColor' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txGeneColor.o -c txGeneColor.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneColor txGeneColor.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneColor skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneColor make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneColor' txGeneExplainUpdate1 make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneExplainUpdate1' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txGeneExplainUpdate1.o -c txGeneExplainUpdate1.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneExplainUpdate1 txGeneExplainUpdate1.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneExplainUpdate1 skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneExplainUpdate1 make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneExplainUpdate1' txGeneFromBed make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneFromBed' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txGeneFromBed.o -c txGeneFromBed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneFromBed txGeneFromBed.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneFromBed skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneFromBed make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneFromBed' txGeneProtAndRna make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneProtAndRna' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txGeneProtAndRna.o -c txGeneProtAndRna.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneProtAndRna txGeneProtAndRna.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneProtAndRna skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneProtAndRna make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneProtAndRna' txGeneSeparateNoncoding make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneSeparateNoncoding' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txGeneSeparateNoncoding.o -c txGeneSeparateNoncoding.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneSeparateNoncoding txGeneSeparateNoncoding.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneSeparateNoncoding skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneSeparateNoncoding make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneSeparateNoncoding' txGeneXref make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneXref' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txGeneXref.o -c txGeneXref.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneXref txGeneXref.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneXref skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneXref make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneXref' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene' ( cd txGraph && echo txGraph && make ) txGraph make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph' agxToTxg make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/agxToTxg' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o agxToTxg.o -c agxToTxg.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agxToTxg agxToTxg.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agxToTxg skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agxToTxg make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/agxToTxg' bedToTxEdges make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/bedToTxEdges' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bedToTxEdges.o -c bedToTxEdges.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToTxEdges bedToTxEdges.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToTxEdges skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToTxEdges make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/bedToTxEdges' txAbFragFind make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txAbFragFind' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txAbFragFind.o -c txAbFragFind.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txAbFragFind txAbFragFind.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txAbFragFind skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txAbFragFind make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txAbFragFind' txBedToGraph make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txBedToGraph' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txBedToGraph.o -c txBedToGraph.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o makeGraph.o -c makeGraph.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txBedToGraph txBedToGraph.o makeGraph.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txBedToGraph skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txBedToGraph make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txBedToGraph' txOrtho make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txOrtho' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txOrtho.o -c txOrtho.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txOrtho txOrtho.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txOrtho skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txOrtho make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txOrtho' txPslFilter make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txPslFilter' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txPslFilter.o -c txPslFilter.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txPslFilter txPslFilter.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txPslFilter skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txPslFilter make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txPslFilter' txPslToBed make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txPslToBed' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txPslToBed.o -c txPslToBed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txPslToBed txPslToBed.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txPslToBed skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txPslToBed make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txPslToBed' txReadRa make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txReadRa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txReadRa.o -c txReadRa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txReadRa txReadRa.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txReadRa skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txReadRa make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txReadRa' txWalk make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txWalk' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txWalk.o -c txWalk.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txWalk txWalk.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txWalk skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txWalk make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txWalk' txgAddEvidence make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgAddEvidence' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txgAddEvidence.o -c txgAddEvidence.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgAddEvidence txgAddEvidence.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgAddEvidence skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgAddEvidence make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgAddEvidence' txgAnalyze make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgAnalyze' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txgAnalyze.o -c txgAnalyze.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgAnalyze txgAnalyze.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgAnalyze skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgAnalyze make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgAnalyze' txgGoodEdges make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgGoodEdges' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txgGoodEdges.o -c txgGoodEdges.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgGoodEdges txgGoodEdges.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgGoodEdges skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgGoodEdges make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgGoodEdges' txgToAgx make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgToAgx' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txgToAgx.o -c txgToAgx.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgToAgx txgToAgx.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgToAgx skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgToAgx make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgToAgx' txgToXml make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgToXml' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txgToXml.o -c txgToXml.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgToXml txgToXml.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgToXml skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgToXml make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgToXml' txgTrim make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgTrim' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o txgTrim.o -c txgTrim.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgTrim txgTrim.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgTrim skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgTrim make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgTrim' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph' ( cd utils && echo utils && make ) utils make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils' (cd bedWeedOverlapping && make) make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/bedWeedOverlapping' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bedWeedOverlapping.o -c bedWeedOverlapping.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedWeedOverlapping bedWeedOverlapping.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedWeedOverlapping skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedWeedOverlapping make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/bedWeedOverlapping' (cd chromGraphFromBin && make) make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/chromGraphFromBin' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chromGraphFromBin.o -c chromGraphFromBin.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chromGraphFromBin chromGraphFromBin.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chromGraphFromBin skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chromGraphFromBin make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/chromGraphFromBin' (cd chromGraphToBin && make) make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/chromGraphToBin' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chromGraphToBin.o -c chromGraphToBin.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chromGraphToBin chromGraphToBin.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chromGraphToBin skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chromGraphToBin make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/chromGraphToBin' (cd crTreeIndexBed && make) make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/crTreeIndexBed' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o crTreeIndexBed.o -c crTreeIndexBed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/crTreeIndexBed crTreeIndexBed.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/crTreeIndexBed skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/crTreeIndexBed make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/crTreeIndexBed' (cd crTreeSearchBed && make) make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/crTreeSearchBed' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o crTreeSearchBed.o -c crTreeSearchBed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/crTreeSearchBed crTreeSearchBed.o ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/crTreeSearchBed skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/crTreeSearchBed make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/crTreeSearchBed' (cd gapToLift && make) make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/gapToLift' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gapToLift.o -c gapToLift.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gapToLift gapToLift.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gapToLift skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gapToLift make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/gapToLift' (cd oligoMatch && make) make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/oligoMatch' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o oligoMatch.o -c oligoMatch.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/oligoMatch oligoMatch.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/oligoMatch' (cd positionalTblCheck && make) make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/positionalTblCheck' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o positionalTblCheck.o -c positionalTblCheck.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/positionalTblCheck positionalTblCheck.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/positionalTblCheck skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/positionalTblCheck make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/positionalTblCheck' (cd safePush && make) make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/safePush' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o safePush.o -c safePush.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/safePush safePush.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/safePush skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/safePush make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/safePush' (cd toDev64 && make) make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/toDev64' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o toDev64.o -c toDev64.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/toDev64 toDev64.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/toDev64 skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/toDev64 make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/toDev64' (cd twoBitMask && make) make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/twoBitMask' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o twoBitMask.o -c twoBitMask.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitMask twoBitMask.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitMask skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitMask make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/twoBitMask' (cd gff3ToGenePred && make) make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/gff3ToGenePred' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gff3ToGenePred.o -c gff3ToGenePred.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gff3ToGenePred gff3ToGenePred.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gff3ToGenePred skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gff3ToGenePred make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/gff3ToGenePred' (cd automation && make) make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/automation' cp -p blastz-make-joblist /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p blastz-normalizeLav /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p blastz-run-ucsc /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p doBlastzChainNet.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p doEnsGeneUpdate.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p doHgNearBlastp.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p synBlastp.csh /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p doRecipBest.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p doRepeatMasker.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p doWindowMasker.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p doSimpleRepeat.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p doSameSpeciesLiftOver.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p ensVersions /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p extractNestedRepeats.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p extractGtf.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p Encode.pm /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p EnsGeneAutomate.pm /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p HgAutomate.pm /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p HgDb.pm /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p HgRemoteScript.pm /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p HgStepManager.pm /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p liftRMAlign.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p makeDownloads.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p makeGenomeDb.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p makePushQSql.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p monthlyUpdateIgtc.csh /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p simplePartition.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p partitionSequence.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p RAFile.pm /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p SafePipe.pm /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts cp -p updateIgtc.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/automation' (cd refreshNamedSessionCustomTracks && make) make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/refreshNamedSessionCustomTracks' i686-pc-linux-gnu-gcc -O2 -pipe -DCGI_BIN=\"none\" -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o refreshNamedSessionCustomTracks.o -c refreshNamedSessionCustomTracks.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/refreshNamedSessionCustomTracks refreshNamedSessionCustomTracks.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/refreshNamedSessionCustomTracks skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/refreshNamedSessionCustomTracks make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/refreshNamedSessionCustomTracks' (cd refSeqGet && make) make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/refSeqGet' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o refSeqVerInfo.o -c refSeqVerInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o refSeqGet.o -c refSeqGet.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/refSeqGet refSeqVerInfo.o refSeqGet.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/refSeqGet skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/refSeqGet make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/refSeqGet' (cd tdbQuery && make) make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/tdbQuery' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o tdbQuery.o -c tdbQuery.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o tdbRecord.o -c tdbRecord.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/tdbQuery tdbQuery.o tdbRecord.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/tdbQuery' (cd wigBedToStep && make) make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/wigBedToStep' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o wigBedToStep.o -c wigBedToStep.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wigBedToStep wigBedToStep.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wigBedToStep skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wigBedToStep make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/wigBedToStep' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils' ( cd uniqSize && echo uniqSize && make ) uniqSize make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/uniqSize' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o uniqSize.o -c uniqSize.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o uniqSize uniqSize.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/uniqSize' ( cd updateStsInfo && echo updateStsInfo && make ) updateStsInfo make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/updateStsInfo' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o updateStsInfo.o -c updateStsInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized updateStsInfo.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm mv a.out updateStsInfo echo 'skipping strip' updateStsInfo skipping strip updateStsInfo chmod a+rx updateStsInfo cp updateStsInfo /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/updateStsInfo' ( cd visiGene/knownToVisiGene && echo visiGene/knownToVisiGene && make ) visiGene/knownToVisiGene make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/visiGene/knownToVisiGene' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o knownToVisiGene.o -c knownToVisiGene.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/knownToVisiGene knownToVisiGene.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/knownToVisiGene skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/knownToVisiGene make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/visiGene/knownToVisiGene' ( cd xmlCat && echo xmlCat && make ) xmlCat make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/xmlCat' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xmlCat.o -c xmlCat.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/xmlCat xmlCat.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/xmlCat skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/xmlCat make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/xmlCat' ( cd xmlToSql && echo xmlToSql && make ) xmlToSql make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/xmlToSql' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xmlToSql.o -c xmlToSql.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o elStat.o -c elStat.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rename.o -c rename.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o tables.o -c tables.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/xmlToSql xmlToSql.o elStat.o rename.o tables.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/xmlToSql skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/xmlToSql make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/xmlToSql' make: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg' make -j14 -j1 -C src utils make: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src' cd lib && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib' ar rcus i686/jkweb.a aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o gifcomp.o gifdecomp.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o mgCircle.o mgHugeFont.o mgLargeFont.o mgMediumFont.o mgPolygon.o mgSmallFont.o mgTinyFont.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rbTree.o rangeTree.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vGfx.o vGif.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib' cd jkOwnLib && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib' ar rcus ../lib/i686/jkOwnLib.a bandExt.o crudeali.o ffAliHelp.o ffSeedExtend.o fuzzyFind.o genoFind.o gfBlatLib.o gfClientLib.o gfInternal.o gfOut.o gfPcrLib.o gfWebLib.o ooc.o patSpace.o splix.o supStitch.o trans3.o xenbig.o xensmall.o make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib' cd hg/lib && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib' make[1]: `../../lib/i686/jkhgap.a' is up to date. make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib' cd hg/protein/lib && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/lib' make[1]: `../../../lib/i686/jkpbap.a' is up to date. make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/lib' ameme make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/ameme' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ameme.o -c ameme.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fragFind.o -c fragFind.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized ameme.o fragFind.o ../lib/i686/jkweb.a -lm echo 'skipping strip' a.out skipping strip a.out mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ameme make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/ameme' blat make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/blat' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blat blat.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blat skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blat make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/blat' cdnaAli make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli' cd lib && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/lib' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o cdnaAli.o -c cdnaAli.c make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/lib' cd ali2alx && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/ali2alx' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ali2alx.o -c ali2alx.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ali2alx ali2alx.o ../lib/cdnaAli.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/ali2alx' cd binGood && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/binGood' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o binGood.o -c binGood.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/binGood binGood.o ../lib/cdnaAli.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/binGood' cd cdnaOff && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/cdnaOff' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o cdnaOff.o -c cdnaOff.c cd ../lib && make make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/lib' make[3]: `cdnaAli.o' is up to date. make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/lib' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/cdnaOff cdnaOff.o ../lib/cdnaAli.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/cdnaOff' cd cluster && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/cluster' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o cluster.o -c cluster.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/cluster cluster.o ../lib/cdnaAli.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/cluster' cd exonAli && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/exonAli' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o exonAli.o -c exonAli.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/exonAli exonAli.o ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/exonAli' cd findCdna && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/findCdna' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o findCdna.o -c findCdna.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized findCdna.o ../../lib/i686/jkweb.a mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/findCdna make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/findCdna' cd g2cCheck && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/g2cCheck' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o g2cCheck.o -c g2cCheck.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o g2cCheck g2cCheck.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/g2cCheck' cd introns && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/introns' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o introns.o -c introns.c i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/introns introns.o ../lib/cdnaAli.o \ ../../lib/i686/jkweb.a echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/introns skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/introns make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/introns' cd refineAli && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/refineAli' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o refineAli.o -c refineAli.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/refiAli refineAli.o ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/refineAli' cd stitchea && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/stitchea' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o stitchea.o -c stitchea.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stitchea stitchea.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/stitchea' cd sortFilt && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/sortFilt' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o sortFilt.o -c sortFilt.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sortFilt sortFilt.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/sortFilt' cd aliGlue && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/aliGlue' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o aliGlue.o -c aliGlue.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/aliGlue aliGlue.o ../../lib/i686/jkweb.a ../../lib/i686/jkOwnLib.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/aliGlue' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli' index make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index' cd bptForTwoBit && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/bptForTwoBit' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bptForTwoBit.o -c bptForTwoBit.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bptForTwoBit bptForTwoBit.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bptForTwoBit skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bptForTwoBit make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/bptForTwoBit' cd bptLookupStringToBits64 && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/bptLookupStringToBits64' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bptLookupStringToBits64.o -c bptLookupStringToBits64.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bptLookupStringToBits64 bptLookupStringToBits64.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bptLookupStringToBits64 skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bptLookupStringToBits64 make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/bptLookupStringToBits64' cd bptMakeStringToBits64 && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/bptMakeStringToBits64' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bptMakeStringToBits64.o -c bptMakeStringToBits64.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bptMakeStringToBits64 bptMakeStringToBits64.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bptMakeStringToBits64 skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bptMakeStringToBits64 make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/bptMakeStringToBits64' cd indexfa && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/indexfa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o indexfa.o -c indexfa.c cd ../../lib && make make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib' ar rcus i686/jkweb.a aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o gifcomp.o gifdecomp.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o mgCircle.o mgHugeFont.o mgLargeFont.o mgMediumFont.o mgPolygon.o mgSmallFont.o mgTinyFont.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rbTree.o rangeTree.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vGfx.o vGif.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized indexfa.o ../../lib/i686/jkweb.a mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/indexfa make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/indexfa' cd indexgl && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/indexgl' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o indexgl.o -c indexgl.c i686-pc-linux-gnu-gcc -O2 -pipe indexgl.o ../../lib/i686/jkweb.a \ -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/indexgl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/indexgl skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/indexgl make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/indexgl' cd ixali && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/ixali' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ixali.o -c ixali.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized ixali.o ../../lib/i686/jkweb.a mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ixali make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/ixali' cd ixword1 && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/ixword1' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ixword1.o -c ixword1.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized ixword1.o ../../lib/i686/jkweb.a mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ixword1 make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/ixword1' cd ixword3 && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/ixword3' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ixword3.o -c ixword3.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized ixword3.o ../../lib/i686/jkweb.a mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ixword3 make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/ixword3' cd makepgo && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/makepgo' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o makepgo.o -c makepgo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized makepgo.o ../../lib/i686/jkweb.a mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/makepgo make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/makepgo' cd stToXao && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/stToXao' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o stToXao.o -c stToXao.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized stToXao.o ../../lib/i686/jkweb.a mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stToXao make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/stToXao' cd ixIxx && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/ixIxx' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ixIxx.o -c ixIxx.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ixIxx ixIxx.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ixIxx skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ixIxx make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/ixIxx' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index' reformat make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat' cd fatont4 && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/fatont4' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fatont4.o -c fatont4.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized fatont4.o ../../lib/i686/jkweb.a mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fatont4 make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/fatont4' cd gbtofa && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/gbtofa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gbtofa.o -c gbtofa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gbtofa gbtofa.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/gbtofa' cd geniegff && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/geniegff' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o geniegff.o -c geniegff.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/geniegff geniegff.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/geniegff' cd gffgenes && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/gffgenes' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -DGZ_FILENAMES=1 -o gffgenes.o -c gffgenes.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gffgenes gffgenes.o \ ../../lib/i686/jkweb.a echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gffgenes skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gffgenes make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/gffgenes' cd moresyn && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/moresyn' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o moresyn.o -c moresyn.c i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/moresyn moresyn.o ../../lib/i686/jkweb.a echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/moresyn skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/moresyn make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/moresyn' cd gb2cdi && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/gb2cdi' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gb2cdi.o -c gb2cdi.c i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gb2cdi gb2cdi.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/gb2cdi' cd wabToSt && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/wabToSt' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o wabToSt.o -c wabToSt.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wabToSt wabToSt.o ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/wabToSt' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat' xenoAli make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/xenoAli' cd bwana && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/xenoAli/bwana' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bwana.o -c bwana.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized bwana.o ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bwana make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/xenoAli/bwana' cd dynAlign && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/xenoAli/dynAlign' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dynAlign.o -c dynAlign.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized dynAlign.o ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a -lm chmod a+x a.out chmod g-w a.out make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/xenoAli/dynAlign' cd stitcher && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/xenoAli/stitcher' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o stitcher.o -c stitcher.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized stitcher.o ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a -lm mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stitcher make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/xenoAli/stitcher' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/xenoAli' dnaDust make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/dnaDust' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnadust.o -c dnadust.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized dnadust.o ../lib/i686/jkweb.a mv a.out dnadust.exe chmod a+rx dnadust.exe make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/dnaDust' protDust make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/protDust' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o protDust.o -c protDust.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized protDust.o ../lib/i686/jkweb.a mv a.out protDust.exe chmod a+rx protDust.exe make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/protDust' idbQuery make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/idbQuery' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o idbQuery.o -c idbQuery.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized idbQuery.o ../lib/i686/jkweb.a mv a.out idbQuery.exe chmod a+rx idbQuery.exe make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/idbQuery' scanIntrons make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/scanIntrons' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o scanIntrons.o -c scanIntrons.c cd ../lib && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib' ar rcus i686/jkweb.a aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o gifcomp.o gifdecomp.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o mgCircle.o mgHugeFont.o mgLargeFont.o mgMediumFont.o mgPolygon.o mgSmallFont.o mgTinyFont.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rbTree.o rangeTree.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vGfx.o vGif.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized scanIntrons.o ../lib/i686/jkweb.a mv a.out scanIntrons.exe chmod a+rx scanIntrons.exe make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/scanIntrons' tracks make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/tracks' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o tracks.o -c tracks.c i686-pc-linux-gnu-gcc -O2 -pipe tracks.o ../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl mv a.out tracksWS120.exe chmod a+rx tracksWS120.exe make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/tracks' weblet make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/weblet' cd bottleneck && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/weblet/bottleneck' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bottleneck.o -c bottleneck.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bottleneck bottleneck.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bottleneck skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bottleneck make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/weblet/bottleneck' cd counter && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/weblet/counter' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o counter.o -c counter.c counter.c: In function ‘incCount’: counter.c:55:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result counter.c:57:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result counter.c:58:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result counter.c:66:15: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized counter.o ../../lib/i686/jkweb.a mv a.out counter.exe chmod a+rx counter.exe echo 'skipping strip' counter.exe skipping strip counter.exe make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/weblet/counter' cd hitreport && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/weblet/hitreport' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hitreport.o -c hitreport.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized hitreport.o ../../lib/i686/jkweb.a mv a.out hitreport.exe chmod a+rx hitreport.exe make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/weblet/hitreport' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/weblet' aladdin make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/aladdin' cd aladdin && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/aladdin/aladdin' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o aladdin.o -c aladdin.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized aladdin.o ../../lib/i686/jkweb.a -lm mv a.out aladdin.exe chmod a+rx aladdin.exe make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/aladdin/aladdin' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/aladdin' getgene make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/getgene' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o getgene.o -c getgene.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized getgene.o ../lib/i686/jkweb.a mv a.out getgene.exe make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/getgene' primeMate make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/primeMate' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o primeMate.o -c primeMate.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized primeMate.o ../lib/i686/jkweb.a mv a.out primeMate.exe make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/primeMate' wormAli make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/wormAli' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o wormAli.o -c wormAli.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized wormAli.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a -lm mv a.out wormAli.exe make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/wormAli' fuse make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/fuse' udcFuse make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/fuse/udcFuse' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o udcFuse.o -c udcFuse.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/udcFuse udcFuse.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/udcFuse skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/udcFuse make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/fuse/udcFuse' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/fuse' cd utils && make make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils' aNotB make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/aNotB' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o aNotB.o -c aNotB.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/aNotB aNotB.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/aNotB skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/aNotB make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/aNotB' addCols make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/addCols' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o addCols.o -c addCols.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/addCols addCols.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/addCols' ave make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/ave' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ave.o -c ave.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ave ave.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ave skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ave make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/ave' aveCols make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/aveCols' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o aveCols.o -c aveCols.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/aveCols aveCols.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/aveCols' bedClip make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bedClip' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bedClip.o -c bedClip.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedClip bedClip.o ../../lib/i686/jkweb.a -lm -lz echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedClip skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedClip make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bedClip' bedGraphToBigWig make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bedGraphToBigWig' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bedGraphToBigWig.o -c bedGraphToBigWig.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedGraphToBigWig bedGraphToBigWig.o ../../lib/i686/jkweb.a -lm -lz echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedGraphToBigWig skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedGraphToBigWig make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bedGraphToBigWig' bedToBigBed make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bedToBigBed' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bedToBigBed.o -c bedToBigBed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToBigBed bedToBigBed.o ../../lib/i686/jkweb.a -lm -lz echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToBigBed skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToBigBed make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bedToBigBed' bigBedSummary make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigBedSummary' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bigBedSummary.o -c bigBedSummary.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigBedSummary bigBedSummary.o ../../lib/i686/jkweb.a -lm -lz echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigBedSummary skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigBedSummary make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigBedSummary' bigBedToBed make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigBedToBed' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bigBedToBed.o -c bigBedToBed.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigBedToBed bigBedToBed.o ../../lib/i686/jkweb.a -lm -lz echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigBedToBed skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigBedToBed make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigBedToBed' bigWigInfo make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigWigInfo' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bigWigInfo.o -c bigWigInfo.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigInfo bigWigInfo.o ../../lib/i686/jkweb.a -lm -lz echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigInfo skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigInfo make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigWigInfo' bigWigSummary make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigWigSummary' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bigWigSummary.o -c bigWigSummary.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigSummary bigWigSummary.o ../../lib/i686/jkweb.a -lm -lz echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigSummary skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigSummary make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigWigSummary' bigWigToBedGraph make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigWigToBedGraph' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bigWigToBedGraph.o -c bigWigToBedGraph.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigToBedGraph bigWigToBedGraph.o ../../lib/i686/jkweb.a -lm -lz echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigToBedGraph skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigToBedGraph make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigWigToBedGraph' bigWigToWig make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigWigToWig' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bigWigToWig.o -c bigWigToWig.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigToWig bigWigToWig.o ../../lib/i686/jkweb.a -lm -lz echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigToWig skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigToWig make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigWigToWig' calc make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/calc' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o calc.o -c calc.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/calc calc.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/calc skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/calc make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/calc' catDir make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/catDir' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o catDir.o -c catDir.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/catDir catDir.o ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/catDir' catUncomment make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/catUncomment' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o catUncomment.o -c catUncomment.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/catUncomment catUncomment.o ../../lib/i686/jkweb.a echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/catUncomment skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/catUncomment make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/catUncomment' ccCp make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/ccCp' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ccCp.o -c ccCp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ccCp ccCp.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/ccCp' chopFaLines make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/chopFaLines' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chopFaLines.o -c chopFaLines.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chopFaLines chopFaLines.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/chopFaLines' countChars make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/countChars' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o countChars.o -c countChars.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/countChars countChars.o ../../lib/i686/jkweb.a echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/countChars skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/countChars make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/countChars' convolve make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/convolve' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o convolve.o -c convolve.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/convolve convolve.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/convolve skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/convolve make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/convolve' cvsTools make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/cvsTools' chmod a+rx cvsFiles cp -pf cvsFiles /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/cvsFiles chmod a+rx cvsStatusFilter cp -pf cvsStatusFilter /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/cvsStatusFilter chmod a+rx cvsup cp -pf cvsup /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/cvsup chmod a+rx cvscheck cp -pf cvscheck /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/cvscheck make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/cvsTools' detab make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/detab' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o detab.o -c detab.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/detab detab.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/detab skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/detab make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/detab' endsInLf make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/endsInLf' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o endsInLf.o -c endsInLf.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/endsInLf endsInLf.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/endsInLf skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/endsInLf make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/endsInLf' fastqToFa make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/fastqToFa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fastqToFa.o -c fastqToFa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fastqToFa fastqToFa.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fastqToFa skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fastqToFa make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/fastqToFa' faAlign make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faAlign' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faAlign.o -c faAlign.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faAlign faAlign.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faAlign skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faAlign make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faAlign' faCmp make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faCmp' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faCmp.o -c faCmp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faCmp faCmp.o ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faCmp' faCount make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faCount' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faCount.o -c faCount.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faCount faCount.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faCount skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faCount make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faCount' faFilterN make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faFilterN' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faFilterN.o -c faFilterN.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFilterN faFilterN.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFilterN skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFilterN make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faFilterN' faFilter make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faFilter' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faFilter.o -c faFilter.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFilter faFilter.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFilter skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFilter make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faFilter' faFlyBaseToUcsc make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faFlyBaseToUcsc' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faFlyBaseToUcsc.o -c faFlyBaseToUcsc.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFlyBaseToUcsc faFlyBaseToUcsc.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFlyBaseToUcsc skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFlyBaseToUcsc make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faFlyBaseToUcsc' faFrag make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faFrag' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faFrag.o -c faFrag.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFrag faFrag.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFrag skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFrag make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faFrag' faGapLocs make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faGapLocs' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faGapLocs.o -c faGapLocs.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faGapLocs faGapLocs.o ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faGapLocs' faGapSizes make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faGapSizes' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faGapSizes.o -c faGapSizes.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faGapSizes faGapSizes.o ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faGapSizes' faNcbiToUcsc make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faNcbiToUcsc' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faNcbiToUcsc.o -c faNcbiToUcsc.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faNcbiToUcsc faNcbiToUcsc.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faNcbiToUcsc skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faNcbiToUcsc make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faNcbiToUcsc' faNoise make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faNoise' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faNoise.o -c faNoise.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faNoise faNoise.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faNoise' faOneRecord make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faOneRecord' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faOneRecord.o -c faOneRecord.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faOneRecord faOneRecord.o ../../lib/i686/jkweb.a echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faOneRecord skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faOneRecord make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faOneRecord' faPolyASizes make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faPolyASizes' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faPolyASizes.o -c faPolyASizes.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faPolyASizes faPolyASizes.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faPolyASizes skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faPolyASizes make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faPolyASizes' faRc make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faRc' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faRc.o -c faRc.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faRc faRc.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faRc skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faRc make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faRc' faSimplify make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faSimplify' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faSimplify.o -c faSimplify.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSimplify faSimplify.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSimplify skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSimplify make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faSimplify' faSize make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faSize' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faSize.o -c faSize.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSize faSize.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSize skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSize make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faSize' faSomeRecords make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faSomeRecords' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faSomeRecords.o -c faSomeRecords.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSomeRecords faSomeRecords.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSomeRecords skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSomeRecords make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faSomeRecords' faSplit make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faSplit' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -ggdb -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faSplit.o -c faSplit.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -ggdb -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSplit faSplit.o \ ../../lib/i686/jkweb.a echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSplit skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSplit make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faSplit' faToFastq make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToFastq' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faToFastq.o -c faToFastq.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToFastq faToFastq.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToFastq skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToFastq make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToFastq' faToNib make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToNib' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToNib faToNib.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToNib skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToNib make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToNib' faToTab make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToTab' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faToTab.o -c faToTab.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToTab faToTab.o ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToTab' faToTwoBit make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToTwoBit' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToTwoBit faToTwoBit.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToTwoBit skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToTwoBit make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToTwoBit' faTrans make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faTrans' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faTrans.o -c faTrans.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faTrans faTrans.o ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faTrans' faTrimPolyA make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faTrimPolyA' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faTrimPolyA.o -c faTrimPolyA.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faTrimPolyA faTrimPolyA.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faTrimPolyA skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faTrimPolyA make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faTrimPolyA' faTrimRead make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faTrimRead' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faTrimRead.o -c faTrimRead.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faTrimRead faTrimRead.o ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faTrimRead' findMotif make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/findMotif' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o findMotif.o -c findMotif.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/findMotif findMotif.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/findMotif skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/findMotif make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/findMotif' fixCr make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/fixCr' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fixCr.o -c fixCr.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fixCr fixCr.o ../../lib/i686/jkweb.a echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fixCr skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fixCr make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/fixCr' gapSplit make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/gapSplit' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gapSplit.o -c gapSplit.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gapSplit gapSplit.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gapSplit skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gapSplit make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/gapSplit' gffPeek make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/gffPeek' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gffPeek.o -c gffPeek.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gffPeek gffPeek.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gffPeek skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gffPeek make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/gffPeek' headRest make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/headRest' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o headRest.o -c headRest.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/headRest headRest.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/headRest skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/headRest make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/headRest' htmlPics make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/htmlPics' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o htmlPics.o -c htmlPics.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/htmlPics htmlPics.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/htmlPics' htmlCheck make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/htmlCheck' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o htmlCheck.o -c htmlCheck.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/htmlCheck htmlCheck.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/htmlCheck skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/htmlCheck make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/htmlCheck' jkUniq make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/jkUniq' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o jkUniq.o -c jkUniq.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/jkUniq jkUniq.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/jkUniq' lineCount make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/lineCount' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o lineCount.o -c lineCount.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/lineCount lineCount.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/lineCount skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/lineCount make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/lineCount' newProg make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/newProg' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o newProg.o -c newProg.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/newProg newProg.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/newProg' nibFrag make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/nibFrag' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibFrag nibFrag.o ../../lib/i686/jkweb.a echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibFrag skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibFrag make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/nibFrag' nibSize make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/nibSize' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o nibSize.o -c nibSize.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibSize nibSize.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/nibSize' nt4Frag make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/nt4Frag' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o nt4Frag.o -c nt4Frag.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nt4Frag nt4Frag.o ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/nt4Frag' pslToPslx make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/pslToPslx' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslToPslx.o -c pslToPslx.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslToPslx pslToPslx.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslToPslx skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslToPslx make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/pslToPslx' pslToXa make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/pslToXa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslToXa.o -c pslToXa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslToXa pslToXa.o ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/pslToXa' randomLines make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/randomLines' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o randomLines.o -c randomLines.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/randomLines randomLines.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/randomLines skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/randomLines make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/randomLines' raSqlQuery make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/raSqlQuery' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o raSqlQuery.o -c raSqlQuery.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o raRecord.o -c raRecord.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raSqlQuery raSqlQuery.o raRecord.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/raSqlQuery' raToTab make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/raToTab' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o raToTab.o -c raToTab.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToTab raToTab.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToTab skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToTab make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/raToTab' raToLines make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/raToLines' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o raToLines.o -c raToLines.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToLines raToLines.o ../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl #echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToLines i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o linesToRa.o -c linesToRa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/linesToRa linesToRa.o ../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl #echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/linesToRa make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/raToLines' rmFaDups make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/rmFaDups' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rmFaDups.o -c rmFaDups.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/rmFaDups rmFaDups.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/rmFaDups' rowsToCols make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/rowsToCols' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rowsToCols.o -c rowsToCols.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/rowsToCols rowsToCols.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/rowsToCols skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/rowsToCols make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/rowsToCols' scaffoldFaToAgp make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/scaffoldFaToAgp' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o scaffoldFaToAgp.o -c scaffoldFaToAgp.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/scaffoldFaToAgp scaffoldFaToAgp.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/scaffoldFaToAgp' scrambleFa make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/scrambleFa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o scrambleFa.o -c scrambleFa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/scrambleFa scrambleFa.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/scrambleFa' sizeof make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/sizeof' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o sizeof.o -c sizeof.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sizeof sizeof.o echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sizeof skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sizeof make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/sizeof' spacedToTab make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/spacedToTab' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spacedToTab.o -c spacedToTab.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spacedToTab spacedToTab.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spacedToTab skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spacedToTab make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/spacedToTab' splitFile make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/splitFile' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o splitFile.o -c splitFile.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/splitFile splitFile.o ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/splitFile' splitFileByColumn make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/splitFileByColumn' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o splitFileByColumn.o -c splitFileByColumn.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/splitFileByColumn splitFileByColumn.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/splitFileByColumn skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/splitFileByColumn make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/splitFileByColumn' stringify make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/stringify' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify stringify.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/stringify' subChar make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/subChar' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o subChar.o -c subChar.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subChar subChar.o ../../lib/i686/jkweb.a echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subChar skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subChar make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/subChar' subColumn make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/subColumn' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o subColumn.o -c subColumn.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subColumn subColumn.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subColumn skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subColumn make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/subColumn' subs make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/subs' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o subs.o -c subs.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subs subs.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/subs' tableSum make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/tableSum' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o tableSum.o -c tableSum.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/tableSum tableSum.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/tableSum skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/tableSum make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/tableSum' tailLines make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/tailLines' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o tailLines.o -c tailLines.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/tailLines tailLines.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/tailLines' textHist2 make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/textHist2' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o textHist2.o -c textHist2.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/textHist2 textHist2.o ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/textHist2' textHistogram make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/textHistogram' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o textHistogram.o -c textHistogram.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/textHistogram textHistogram.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/textHistogram skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/textHistogram make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/textHistogram' tickToDate make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/tickToDate' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o tickToDate.o -c tickToDate.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/tickToDate tickToDate.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/tickToDate skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/tickToDate make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/tickToDate' timing make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/timing' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gmtime.o -c gmtime.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gmtime gmtime.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gmtime skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gmtime i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o localtime.o -c localtime.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/localtime localtime.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/localtime skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/localtime i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mktime.o -c mktime.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mktime mktime.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mktime skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mktime make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/timing' toLower make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/toLower' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o toLower.o -c toLower.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/toLower toLower.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/toLower' toUpper make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/toUpper' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o toUpper.o -c toUpper.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/toUpper toUpper.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/toUpper' twoBitInfo make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/twoBitInfo' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitInfo twoBitInfo.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitInfo skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitInfo make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/twoBitInfo' twoBitToFa make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/twoBitToFa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitToFa twoBitToFa.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitToFa skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitToFa make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/twoBitToFa' udcCleanup make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/udcCleanup' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o udcCleanup.o -c udcCleanup.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/udcCleanup udcCleanup.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/udcCleanup skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/udcCleanup make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/udcCleanup' undupFa make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/undupFa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o undupFa.o -c undupFa.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/undupFa undupFa.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/undupFa' upper make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/upper' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o upper.o -c upper.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/upper upper.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/upper' venn make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/venn' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o venn.o -c venn.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/venn venn.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/venn skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/venn make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/venn' weedLines make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/weedLines' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o weedLines.o -c weedLines.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/weedLines weedLines.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/weedLines skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/weedLines make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/weedLines' wigToBigWig make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/wigToBigWig' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o wigToBigWig.o -c wigToBigWig.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wigToBigWig wigToBigWig.o ../../lib/i686/jkweb.a -lm -lz make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/wigToBigWig' wigTestMaker make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/wigTestMaker' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o wigTestMaker.o -c wigTestMaker.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wigTestMaker wigTestMaker.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wigTestMaker skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wigTestMaker make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/wigTestMaker' wordLine make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/wordLine' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o wordLine.o -c wordLine.c i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wordLine wordLine.o ../../lib/i686/jkweb.a echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wordLine skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wordLine make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/wordLine' make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils' cd hg && make utils make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg' cd lib && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib' make[2]: `../../lib/i686/jkhgap.a' is up to date. make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib' cd protein/lib && make make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/lib' make[2]: `../../../lib/i686/jkpbap.a' is up to date. make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/lib' ( cd affyTransciptome && echo affyTransciptome && make ) affyTransciptome make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/affyTransciptome' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit -I../inc -I../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/affyPairsToSample affyPairsToSample.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit -I../inc -I../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/normalizeSampleFile normalizeSampleFile.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit -I../inc -I../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/avgTranscriptomeExps avgTranscriptomeExps.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit -I../inc -I../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/maxTranscriptomeExps maxTranscriptomeExps.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit -I../inc -I../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/scaleSampleFiles scaleSampleFiles.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit -I../inc -I../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/averageZoomLevels averageZoomLevels.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit -I../inc -I../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/groupSamples groupSamples.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/affyTransciptome' ( cd agpCloneCheck && echo agpCloneCheck && make ) agpCloneCheck make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpCloneCheck' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpCloneCheck agpCloneCheck.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpCloneCheck' ( cd agpCloneList && echo agpCloneList && make ) agpCloneList make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpCloneList' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpCloneList agpCloneList.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpCloneList' ( cd agpAllToFaFile && echo agpAllToFaFile && make ) agpAllToFaFile make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpAllToFaFile' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpAllToFaFile agpAllToFaFile.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpAllToFaFile' ( cd agpToFa && echo agpToFa && make ) agpToFa make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpToFa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToFa \ agpToFa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToFa skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToFa make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpToFa' ( cd agpToGl && echo agpToGl && make ) agpToGl make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpToGl' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToGl agpToGl.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToGl skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToGl make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpToGl' ( cd altSplice && echo altSplice && make ) altSplice make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice' cd lib; make make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice/lib' make[3]: `i686/libSpliceGraph.a' is up to date. make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice/lib' cd altSplice; make make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice/altSplice' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sequenceForBed sequenceForBed.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/altAnalysis altAnalysis.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/altSplice altSplice.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orthoSplice orthoSplice.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agxToBed agxToBed.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/altSummary altSummary.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedInGraph bedInGraph.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/consForBed consForBed.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/altPaths altPaths.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToExons bedToExons.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -I../../../inc -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredToPsl genePredToPsl.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice/altSplice' make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice' ( cd autoDtd && echo autoDtd && make ) autoDtd make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoDtd' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoDtd autoDtd.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoDtd skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoDtd make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoDtd' ( cd autoSql && echo autoSql && make ) autoSql make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoSql' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoSql' ( cd autoXml && echo autoXml && make ) autoXml make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoXml' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoXml autoXml.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoXml' ( cd bedOrBlocks && echo bedOrBlocks && make ) bedOrBlocks make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedOrBlocks' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedOrBlocks bedOrBlocks.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedOrBlocks skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedOrBlocks make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedOrBlocks' ( cd bedIntersect && echo bedIntersect && make ) bedIntersect make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedIntersect' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedIntersect bedIntersect.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedIntersect' ( cd bedItemOverlapCount && echo bedItemOverlapCount && make ) bedItemOverlapCount make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedItemOverlapCount' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedItemOverlapCount bedItemOverlapCount.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedItemOverlapCount skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedItemOverlapCount make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedItemOverlapCount' ( cd bedSort && echo bedSort && make ) bedSort make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedSort' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedSort bedSort.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedSort' ( cd bedToGenePred && echo bedToGenePred && make ) bedToGenePred make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedToGenePred' make[2]: `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToGenePred' is up to date. make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedToGenePred' ( cd bedSplitOnChrom && echo bedSplitOnChrom && make ) bedSplitOnChrom make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedSplitOnChrom' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedSplitOnChrom bedSplitOnChrom.o ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedSplitOnChrom skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedSplitOnChrom make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedSplitOnChrom' ( cd blastToPsl && echo blastToPsl && make ) blastToPsl make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/blastToPsl' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/blastToPsl' ( cd borfBig && echo borfBig && make ) borfBig make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/borfBig' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/borfBig borfBig.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/borfBig skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/borfBig make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/borfBig' ( cd checkHgFindSpec && echo checkHgFindSpec && make ) checkHgFindSpec make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/checkHgFindSpec' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o checkHgFindSpec checkHgFindSpec.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm mv checkHgFindSpec /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkHgFindSpec make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/checkHgFindSpec' ( cd checkTableCoords && echo checkTableCoords && make ) checkTableCoords make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/checkTableCoords' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o checkTableCoords checkTableCoords.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' checkTableCoords skipping strip checkTableCoords mv checkTableCoords /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkTableCoords make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/checkTableCoords' ( cd ctgFaToFa && echo ctgFaToFa && make ) ctgFaToFa make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ctgFaToFa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ctgFaToFa ctgFaToFa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ctgFaToFa' ( cd ctgToChromFa && echo ctgToChromFa && make ) ctgToChromFa make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ctgToChromFa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ctgToChromFa ctgToChromFa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ctgToChromFa skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ctgToChromFa make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ctgToChromFa' ( cd dbTrash && echo dbTrash && make ) dbTrash make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/dbTrash' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbTrash dbTrash.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbTrash skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbTrash make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/dbTrash' ( cd estOrient && echo estOrient && make ) estOrient make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/estOrient' make[2]: `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/estOrient' is up to date. make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/estOrient' ( cd embossToPsl && echo embossToPsl && make ) embossToPsl make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/embossToPsl' make[2]: `embossToPsl' is up to date. make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/embossToPsl' ( cd encode/validateFiles && echo encode/validateFiles && make ) encode/validateFiles make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/validateFiles' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/validateFiles validateFiles.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/validateFiles skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/validateFiles make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/validateFiles' ( cd fakeFinContigs && echo fakeFinContigs && make ) fakeFinContigs make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fakeFinContigs' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fakeFinContigs fakeFinContigs.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fakeFinContigs' ( cd fakeOut && echo fakeOut && make ) fakeOut make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fakeOut' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fakeOut fakeOut.o ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fakeOut' ( cd featureBits && echo featureBits && make ) featureBits make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/featureBits' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/featureBits featureBits.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/featureBits skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/featureBits make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/featureBits' ( cd ffaToFa && echo ffaToFa && make ) ffaToFa make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ffaToFa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ffaToFa ffaToFa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ffaToFa' ( cd fishClones && echo fishClones && make ) fishClones make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fishClones' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized fishClones.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm mv a.out fishClones echo 'skipping strip' fishClones skipping strip fishClones chmod a+rx fishClones cp fishClones /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fishClones' ( cd fqToQa && echo fqToQa && make ) fqToQa make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fqToQa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fqToQa fqToQa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fqToQa skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fqToQa make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fqToQa' ( cd fqToQac && echo fqToQac && make ) fqToQac make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fqToQac' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fqToQac fqToQac.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fqToQac' ( cd fragPart && echo fragPart && make ) fragPart make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fragPart' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fragPart fragPart.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fragPart skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fragPart make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fragPart' ( cd gbGetEntries && echo gbGetEntries && make ) gbGetEntries make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbGetEntries' i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gbGetEntries gbGetEntries.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbGetEntries' ( cd gbOneAcc && echo gbOneAcc && make ) gbOneAcc make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbOneAcc' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gbOneAcc gbOneAcc.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbOneAcc' ( cd gbToFaRa && echo gbToFaRa && make ) gbToFaRa make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbToFaRa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gbToFaRa gbToFaRa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbToFaRa' ( cd geneBounds && echo geneBounds && make ) geneBounds make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds' ( cd assessLibs && echo assessLibs && make ) assessLibs make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/assessLibs' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/assessLibs assessLibs.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/assessLibs skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/assessLibs make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/assessLibs' ( cd averagExp && echo averagExp && make ) averagExp make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/averagExp' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/averagExp averagExp.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/averagExp skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/averagExp make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/averagExp' ( cd axtForEst && echo axtForEst && make ) axtForEst make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/axtForEst' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtForEst axtForEst.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/axtForEst' ( cd bedCons && echo bedCons && make ) bedCons make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/bedCons' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedCons bedCons.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/bedCons' ( cd checkableBorf && echo checkableBorf && make ) checkableBorf make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/checkableBorf' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkableBorf checkableBorf.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkableBorf skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkableBorf make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/checkableBorf' ( cd clusterGenes && echo clusterGenes && make ) clusterGenes make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterGenes' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterGenes clusterGenes.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterGenes skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterGenes make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterGenes' ( cd clusterPsl && echo clusterPsl && make ) clusterPsl make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterPsl' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterPsl clusterPsl.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterPsl skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterPsl make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterPsl' ( cd clusterRna && echo clusterRna && make ) clusterRna make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterRna' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterRna clusterRna.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterRna' ( cd dnaMotifFind && echo dnaMotifFind && make ) dnaMotifFind make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/dnaMotifFind' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dnaMotifFind dnaMotifFind.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dnaMotifFind skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dnaMotifFind make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/dnaMotifFind' ( cd eisenInput && echo eisenInput && make ) eisenInput make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/eisenInput' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/eisenInput eisenInput.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/eisenInput skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/eisenInput make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/eisenInput' ( cd emblMatrixToMotif && echo emblMatrixToMotif && make ) emblMatrixToMotif make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/emblMatrixToMotif' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/emblMatrixToMotif emblMatrixToMotif.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/emblMatrixToMotif skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/emblMatrixToMotif make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/emblMatrixToMotif' ( cd estLibStats && echo estLibStats && make ) estLibStats make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/estLibStats' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/estLibStats estLibStats.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/estLibStats skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/estLibStats make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/estLibStats' ( cd expToRna && echo expToRna && make ) expToRna make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/expToRna' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/expToRna expToRna.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/expToRna skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/expToRna make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/expToRna' ( cd iriToControlTable && echo iriToControlTable && make ) iriToControlTable make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/iriToControlTable' cd ../lib && make make[4]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib' echo all done all done make[4]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToControlTable iriToControlTable.o ../lib/improbRunInfo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToControlTable skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToControlTable make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/iriToControlTable' ( cd iriToDnaMotif && echo iriToDnaMotif && make ) iriToDnaMotif make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/iriToDnaMotif' cd ../lib && make make[4]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib' echo all done all done make[4]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToDnaMotif iriToDnaMotif.o ../lib/improbRunInfo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToDnaMotif skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToDnaMotif make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/iriToDnaMotif' ( cd lib && echo lib && make ) lib make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib' echo all done all done make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib' ( cd liftPromoHits && echo liftPromoHits && make ) liftPromoHits make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/liftPromoHits' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftPromoHits liftPromoHits.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftPromoHits skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftPromoHits make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/liftPromoHits' ( cd motifLogo && echo motifLogo && make ) motifLogo make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/motifLogo' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifLogo motifLogo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifLogo skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifLogo make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/motifLogo' ( cd motifSig && echo motifSig && make ) motifSig make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/motifSig' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifSig motifSig.o ../lib/improbRunInfo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifSig skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifSig make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/motifSig' ( cd orf && echo orf && make ) orf make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/orf' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orf orf.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orf skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orf make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/orf' ( cd orfStats && echo orfStats && make ) orfStats make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/orfStats' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orfStats orfStats.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orfStats skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orfStats make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/orfStats' ( cd polyInfo && echo polyInfo && make ) polyInfo make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/polyInfo' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/polyInfo polyInfo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/polyInfo' ( cd promoSeqFromCluster && echo promoSeqFromCluster && make ) promoSeqFromCluster make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/promoSeqFromCluster' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/promoSeqFromCluster promoSeqFromCluster.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/promoSeqFromCluster skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/promoSeqFromCluster make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/promoSeqFromCluster' ( cd raToCds && echo raToCds && make ) raToCds make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/raToCds' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToCds raToCds.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToCds skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToCds make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/raToCds' ( cd twinOrf && echo twinOrf && make ) twinOrf make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf twinOrf.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf' ( cd twinOrf2 && echo twinOrf2 && make ) twinOrf2 make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf2' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf2 twinOrf2.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf2' ( cd twinOrf3 && echo twinOrf3 && make ) twinOrf3 make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf3' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf3 twinOrf3.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf3 skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf3 make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf3' ( cd twinOrfStats && echo twinOrfStats && make ) twinOrfStats make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats twinOrfStats.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats' ( cd twinOrfStats2 && echo twinOrfStats2 && make ) twinOrfStats2 make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats2' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats2 twinOrfStats2.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats2 skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats2 make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats2' ( cd twinOrfStats3 && echo twinOrfStats3 && make ) twinOrfStats3 make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats3' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats3 twinOrfStats3.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats3 skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats3 make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats3' make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds' ( cd genePredCheck && echo genePredCheck && make ) genePredCheck make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredCheck' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredCheck genePredCheck.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredCheck' ( cd genePredHisto && echo genePredHisto && make ) genePredHisto make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredHisto' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredHisto genePredHisto.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredHisto' ( cd genePredSingleCover && echo genePredSingleCover && make ) genePredSingleCover make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredSingleCover' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredSingleCover geneScore.o genePredSingleCover.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredSingleCover' ( cd genePredToGtf && echo genePredToGtf && make ) genePredToGtf make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredToGtf' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredToGtf genePredToGtf.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredToGtf skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredToGtf make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredToGtf' ( cd genePredToFakePsl && echo genePredToFakePsl && make ) genePredToFakePsl make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredToFakePsl' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredToFakePsl genePredToFakePsl.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredToFakePsl' ( cd genePredToMafFrames && echo genePredToMafFrames && make ) genePredToMafFrames make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredToMafFrames' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredToMafFrames orgGenes.o mkMafFrames.o splitMultiMappings.o finishMafFrames.o genePredToMafFrames.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredToMafFrames' ( cd getFeatDna && echo getFeatDna && make ) getFeatDna make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/getFeatDna' i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/getFeatDna getFeatDna.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/getFeatDna' ( cd getRna && echo getRna && make ) getRna make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/getRna' make[2]: `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/getRna' is up to date. make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/getRna' ( cd getRnaPred && echo getRnaPred && make ) getRnaPred make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/getRnaPred' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/getRnaPred getRnaPred.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/getRnaPred skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/getRnaPred make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/getRnaPred' ( cd gigAssembler/checkAgpAndFa && echo gigAssembler/checkAgpAndFa && make ) gigAssembler/checkAgpAndFa make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gigAssembler/checkAgpAndFa' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkAgpAndFa checkAgpAndFa.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkAgpAndFa skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkAgpAndFa make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gigAssembler/checkAgpAndFa' ( cd gpStats && echo gpStats && make ) gpStats make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gpStats' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gpStats gpStats.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gpStats skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gpStats make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gpStats' ( cd gpToGtf && echo gpToGtf && make ) gpToGtf make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gpToGtf' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gpToGtf gpToGtf.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gpToGtf skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gpToGtf make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gpToGtf' ( cd gpcrParser && echo gpcrParser && make ) gpcrParser make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gpcrParser' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o gpcrParser gpcrParser.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm mv gpcrParser /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gpcrParser' ( cd gsBig && echo gsBig && make ) gsBig make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gsBig' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gsBig gsBig.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gsBig' ( cd hgTablesTest && echo hgTablesTest && make ) hgTablesTest make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTablesTest' i686-pc-linux-gnu-gcc -O2 -pipe -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgTablesTest hgTablesTest.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgTablesTest skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgTablesTest make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTablesTest' ( cd hgChroms && echo hgChroms && make ) hgChroms make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgChroms' make[2]: `hgChroms' is up to date. make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgChroms' ( cd hgGetAnn && echo hgGetAnn && make ) hgGetAnn make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGetAnn' make[2]: `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGetAnn' is up to date. make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGetAnn' ( cd hgKnownGeneList && echo hgKnownGeneList && make ) hgKnownGeneList make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgKnownGeneList' i686-pc-linux-gnu-gcc -O2 -pipe -o hgKnownGeneList hgKnownGeneList.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm rm -f /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKnownGeneList mv hgKnownGeneList /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKnownGeneList make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgKnownGeneList' ( cd hgSelect && echo hgSelect && make ) hgSelect make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgSelect' make[2]: `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSelect' is up to date. make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgSelect' ( cd hgSpeciesRna && echo hgSpeciesRna && make ) hgSpeciesRna make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgSpeciesRna' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSpeciesRna hgSpeciesRna.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSpeciesRna skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSpeciesRna make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgSpeciesRna' ( cd hgsql && echo hgsql && make ) hgsql make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsql' i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsql hgsql.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsql skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsql make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsql' ( cd hgsqlLocal && echo hgsqlLocal && make ) hgsqlLocal make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqlLocal' i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqlLocal hgsqlLocal.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqlLocal skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqlLocal make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqlLocal' ( cd hgsqladmin && echo hgsqladmin && make ) hgsqladmin make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqladmin' i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqladmin hgsqladmin.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqladmin skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqladmin make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqladmin' ( cd hgsqldump && echo hgsqldump && make ) hgsqldump make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqldump' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqldump hgsqldump.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqldump skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqldump make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqldump' ( cd hgsqldumpLocal && echo hgsqldumpLocal && make ) hgsqldumpLocal make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqldumpLocal' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqldumpLocal hgsqldumpLocal.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqldumpLocal skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqldumpLocal make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqldumpLocal' ( cd hgsqlimport && echo hgsqlimport && make ) hgsqlimport make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqlimport' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqlimport hgsqlimport.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqlimport skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqlimport make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqlimport' ( cd intronEnds && echo intronEnds && make ) intronEnds make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/intronEnds' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/intronEnds intronEnds.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/intronEnds skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/intronEnds make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/intronEnds' ( cd lib && echo lib && make ) lib make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib' make[2]: `../../lib/i686/jkhgap.a' is up to date. make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib' ( cd liftAcross && echo liftAcross && make ) liftAcross make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftAcross' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftAcross liftAcross.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftAcross skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftAcross make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftAcross' ( cd liftAgp && echo liftAgp && make ) liftAgp make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftAgp' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc -o liftAgp liftAgp.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm mv liftAgp /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftAgp' ( cd liftFrags && echo liftFrags && make ) liftFrags make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftFrags' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftFrags liftFrags.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftFrags' ( cd liftOver && echo liftOver && make ) liftOver make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftOver' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftOver liftOver.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftOver skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftOver i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftOverMerge liftOverMerge.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftOverMerge skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftOverMerge make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftOver' ( cd liftUp && echo liftUp && make ) liftUp make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftUp' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftUp liftUp.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftUp' ( cd lfsOverlap && echo lfsOverlap && make ) lfsOverlap make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lfsOverlap' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/lfsOverlap lfsOverlap.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lfsOverlap' ( cd makeDb && echo makeDb && make ) makeDb make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb' ( cd hgAar && echo hgAar && make ) hgAar make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgAar' make[3]: `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/aarToAxt' is up to date. make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgAar' ( cd hgAddLiftOverChain && echo hgAddLiftOverChain && make ) hgAddLiftOverChain make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgAddLiftOverChain' i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgAddLiftOverChain hgAddLiftOverChain.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgAddLiftOverChain skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgAddLiftOverChain make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgAddLiftOverChain' ( cd hgBbiDbLink && echo hgBbiDbLink && make ) hgBbiDbLink make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgBbiDbLink' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgBbiDbLink hgBbiDbLink.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgBbiDbLink skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgBbiDbLink make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgBbiDbLink' ( cd hgClonePos && echo hgClonePos && make ) hgClonePos make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgClonePos' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgClonePos hgClonePos.o gsSeqInfo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgClonePos' ( cd hgCountAlign && echo hgCountAlign && make ) hgCountAlign make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCountAlign' make[3]: `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgCountAlign' is up to date. make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCountAlign' ( cd hgCtgPos && echo hgCtgPos && make ) hgCtgPos make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCtgPos' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgCtgPos hgCtgPos.o liftSpec.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCtgPos' ( cd hgDeleteChrom && echo hgDeleteChrom && make ) hgDeleteChrom make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgDeleteChrom' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgDeleteChrom hgDeleteChrom.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgDeleteChrom' ( cd hgExperiment && echo hgExperiment && make ) hgExperiment make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgExperiment' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgExperiment hgExperiment.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgExperiment skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgExperiment make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgExperiment' ( cd hgExtFileCheck && echo hgExtFileCheck && make ) hgExtFileCheck make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgExtFileCheck' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgExtFileCheck hgExtFileCheck.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgExtFileCheck' ( cd hgFakeAgp && echo hgFakeAgp && make ) hgFakeAgp make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgFakeAgp' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFakeAgp hgFakeAgp.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFakeAgp skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFakeAgp make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgFakeAgp' ( cd hgFindSpec && echo hgFindSpec && make ) hgFindSpec make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgFindSpec' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFindSpec hgFindSpec.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFindSpec skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFindSpec make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgFindSpec' ( cd hgGcPercent && echo hgGcPercent && make ) hgGcPercent make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGcPercent' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGcPercent \ hgGcPercent.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGcPercent skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGcPercent make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGcPercent' ( cd hgGeneBands && echo hgGeneBands && make ) hgGeneBands make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGeneBands' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGeneBands hgGeneBands.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGeneBands skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGeneBands make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGeneBands' ( cd hgGenericMicroarray && echo hgGenericMicroarray && make ) hgGenericMicroarray make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGenericMicroarray' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGenericMicroarray hgGenericMicroarray.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGenericMicroarray skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGenericMicroarray make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGenericMicroarray' ( cd hgGoldGapGl && echo hgGoldGapGl && make ) hgGoldGapGl make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGoldGapGl' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGoldGapGl \ hgGoldGapGl.o ntContig.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadGap \ hgLoadGap.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGoldGapGl' ( cd hgKgGetText && echo hgKgGetText && make ) hgKgGetText make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKgGetText' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKgGetText hgKgGetText.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKgGetText skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKgGetText make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKgGetText' ( cd hgKgMrna && echo hgKgMrna && make ) hgKgMrna make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKgMrna' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKgMrna hgKgMrna.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKgMrna' ( cd hgKnownMore && echo hgKnownMore && make ) hgKnownMore make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKnownMore' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKnownMore hgKnownMore.o hugoMulti.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKnownMore' ( cd hgKnownMore.oo21 && echo hgKnownMore.oo21 && make ) hgKnownMore.oo21 make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKnownMore.oo21' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKnownMore hgKnownMore.o hugoMulti.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKnownMore.oo21' ( cd hgLoadBed && echo hgLoadBed && make ) hgLoadBed make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadBed' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadBed hgLoadBed.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadBed skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadBed make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadBed' ( cd hgLoadBlastTab && echo hgLoadBlastTab && make ) hgLoadBlastTab make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadBlastTab' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadBlastTab hgLoadBlastTab.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadBlastTab skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadBlastTab make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadBlastTab' ( cd hgLoadChain && echo hgLoadChain && make ) hgLoadChain make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadChain' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadChain \ hgLoadChain.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadChain skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadChain make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadChain' ( cd hgLoadChromGraph && echo hgLoadChromGraph && make ) hgLoadChromGraph make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadChromGraph' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadChromGraph hgLoadChromGraph.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadChromGraph skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadChromGraph make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadChromGraph' ( cd hgLoadGenePred && echo hgLoadGenePred && make ) hgLoadGenePred make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadGenePred' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadGenePred hgLoadGenePred.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadGenePred' ( cd hgLoadItemAttr && echo hgLoadItemAttr && make ) hgLoadItemAttr make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadItemAttr' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadItemAttr hgLoadItemAttr.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadItemAttr skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadItemAttr make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadItemAttr' ( cd hgLoadMaf && echo hgLoadMaf && make ) hgLoadMaf make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadMaf' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadMaf hgLoadMaf.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadMaf skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadMaf i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadMafSummary hgLoadMafSummary.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadMafSummary skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadMafSummary make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadMaf' ( cd hgLoadMafFrames && echo hgLoadMafFrames && make ) hgLoadMafFrames make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadMafFrames' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadMafFrames hgLoadMafFrames.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadMafFrames' ( cd hgLoadNet && echo hgLoadNet && make ) hgLoadNet make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadNet' i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadNet hgLoadNet.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.